Shotgun DNA microarrays and stage-specific gene expression in Plasmodium falciparum malaria.

作者: Rhian E. Hayward , Joseph L. DeRisi , Suad Alfadhli , David C. Kaslow , Patrick O. Brown

DOI: 10.1046/J.1365-2958.2000.01730.X

关键词:

摘要: Summary Malaria infects over 200 million individuals and kills 2 young children every year. Understanding the biology of malarial parasites will be facilitated by DNA microarray technology, which can track global changes in gene expression under different physiological conditions. However, genomes Plasmodium sp. (and many other important pathogenic organisms) remain to fully sequenced so, currently, it is not possible construct gene-specific microarrays representing complete genomes. In this study, 3648 random inserts from a falciparum mung bean nuclease genomic library were used shotgun microarray. Through differential hybridization sequencing relevant clones, large differences identified between blood stage trophozoite form parasite sexual gametocyte form. The present study lengthens our list stage-specific transcripts malaria at least an order magnitude above all previous studies combined. results offer unprecedented number leads for developing transmission blocking agents vaccines directed antigens. A significant fraction stage-selective had no sequence homologues current genome data bases, thereby underscoring importance approach. useful unravelling additional aspects general approach may applied any organism, regardless how much its sequenced.

参考文章(30)
W. Peters, Drug Resistance in Malaria Parasites of Animals and Man Advances in Parasitology Volume 41. ,vol. 41, pp. 1- 62 ,(1998) , 10.1016/S0065-308X(08)60421-2
I A Quakyi, R Carter, L H Miller, N Kumar, J Rener, M F Good, The 230-kDa gamete surface protein of Plasmodium falciparum is also a target for transmission-blocking antibodies. Journal of Immunology. ,vol. 139, pp. 4213- 4217 ,(1987)
K H Brown, S T Brentano, J E Donelson, Mung bean nuclease cleaves preferentially at the boundaries of variant surface glycoprotein gene transpositions in trypanosome DNA. Journal of Biological Chemistry. ,vol. 261, pp. 10352- 10358 ,(1986) , 10.1016/S0021-9258(18)67531-3
Anthony A. Holder, The precursor to major merozoite surface antigens: structure and role in immunity. Progress in allergy. ,vol. 41, pp. 72- 97 ,(1988) , 10.1159/000318614
S. Bowman, D. Lawson, D. Basham, D Brown, T. Chillingworth, C. M. Churcher, A. Craig, R. M. Davies, K. Devlin, T. Feltwell, S. Gentles, R. Gwilliam, N. Hamlin, D. Harris, S. Holroyd, T. Hornsby, P. Horrocks, K. Jagels, B. Jassal, S. Kyes, J. McLean, S. Moule, K. Mungall, L. Murphy, K. Oliver, M. A. Quail, M.-A. Rajandream, S. Rutter, J. Skelton, R. Squares, S. Squares, J. E. Sulston, S. Whitehead, J. R. Woodward, C. Newbold, B. G. Barrell, The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum Nature. ,vol. 400, pp. 532- 538 ,(1999) , 10.1038/22964
Patrick O. Brown, David Botstein, Exploring the new world of the genome with DNA microarrays Nature Genetics. ,vol. 21, pp. 33- 37 ,(1999) , 10.1038/4462
D Walliker, I. Quakyi, T. Wellems, T. McCutchan, A Szarfman, W. London, L. Corcoran, T. Burkot, R Carter, Genetic analysis of the human malaria parasite plasmodium falciparum Science. ,vol. 236, pp. 1661- 1666 ,(1987) , 10.1126/SCIENCE.3299700
P. K. Rathod, T. McErlean, P.-C. Lee, Variations in frequencies of drug resistance in Plasmodium falciparum Proceedings of the National Academy of Sciences of the United States of America. ,vol. 94, pp. 9389- 9393 ,(1997) , 10.1073/PNAS.94.17.9389
Akhil B. Vaidya, Olga Muratova, Françoise Guinet, David Keister, Thomas E. Wellems, David C. Kaslow, A genetic locus on Plasmodium falciparum chromosome 12 linked to a defect in mosquito-infectivity and male gametogenesis. Molecular and Biochemical Parasitology. ,vol. 69, pp. 65- 71 ,(1995) , 10.1016/0166-6851(94)00199-W