Targeting the Autophagy Specific Lipid Kinase VPS34 for Cancer Treatment: An Integrative Repurposing Strategy

作者: Thanyada Rungrotmongkol , Ramanathan Karuppasamy , Kanika Verma , Poornimaa Murali , Perarasu Thangavelu

DOI: 10.1007/S10930-020-09955-4

关键词:

摘要: The impact of autophagy on cancer treatment and its corresponding responsiveness has galvanized the scientific community to develop novel inhibitors for treatment. Importantly, discovery that targets early phase was identified as a beneficial choice. Despite number research in recent years, screening DrugBank repository (9591 molecules) Vacuolar protein sorting 34 (VPS34) not been reported earlier. Therefore, present study designed identify potential VPS34 antagonists using integrated pharmacophore strategies. Primarily, an energy-based receptor cavity-based analysis yielded five (DHRRR) seven featured (AADDHRR) hypotheses respectively, which were utilized database process. glide score, binding free energy, pharmacokinetics pharmacodynamics properties examined narrow down screened compounds. This hit molecule, DB03916 exhibited better docking higher affinity drug-like contrast reference compound suffers from toxicity property. result validated 50 ns molecular dynamics simulation study. Overall, we conclude molecule is believed serve prospective antagonist against

参考文章(62)
John Hodgson, ADMET—turning chemicals into drugs Nature Biotechnology. ,vol. 19, pp. 722- 726 ,(2001) , 10.1038/90761
Nadia Jaber, Wei-Xing Zong, Class III PI3K Vps34: essential roles in autophagy, endocytosis, and heart and liver function Annals of the New York Academy of Sciences. ,vol. 1280, pp. 48- 51 ,(2013) , 10.1111/NYAS.12026
Malcolm C. Pike, Susan Preston-Martin, Brian E. Henderson, Peter A. Jones, Ronald K. Ross, INCREASED CELL DIVISION AS A CAUSE OF HUMAN CANCER Cancer Research. ,vol. 50, pp. 7415- 7421 ,(1990)
Xiang-Qun Sean Xie, Exploiting PubChem for virtual screening Expert Opinion on Drug Discovery. ,vol. 5, pp. 1205- 1220 ,(2010) , 10.1517/17460441.2010.524924
Andrea Rizzi, Alessandro Fioni, Virtual screening using PLS discriminant analysis and ROC curve approach: an application study on PDE4 inhibitors. Journal of Chemical Information and Modeling. ,vol. 48, pp. 1686- 1692 ,(2008) , 10.1021/CI800072R
Peter A. Kollman, Irina Massova, Carolina Reyes, Bernd Kuhn, Shuanghong Huo, Lillian Chong, Matthew Lee, Taisung Lee, Yong Duan, Wei Wang, Oreola Donini, Piotr Cieplak, Jaysharee Srinivasan, David A. Case, Thomas E. Cheatham, Calculating Structures and Free Energies of Complex Molecules:  Combining Molecular Mechanics and Continuum Models Accounts of Chemical Research. ,vol. 33, pp. 889- 897 ,(2000) , 10.1021/AR000033J
Noeris K. Salam, Roberto Nuti, Woody Sherman, Novel method for generating structure-based pharmacophores using energetic analysis. Journal of Chemical Information and Modeling. ,vol. 49, pp. 2356- 2368 ,(2009) , 10.1021/CI900212V
Kh. Dhanachandra Singh, Palani Kirubakaran, Shanthi Nagarajan, Sugunadevi Sakkiah, Karthikeyan Muthusamy, Devadasan Velmurgan, Jeyaraman Jeyakanthan, Homology modeling, molecular dynamics, e-pharmacophore mapping and docking study of Chikungunya virus nsP2 protease Journal of Molecular Modeling. ,vol. 18, pp. 39- 51 ,(2012) , 10.1007/S00894-011-1018-3
Thomas A. Halgren, Robert B. Murphy, Richard A. Friesner, Hege S. Beard, Leah L. Frye, W. Thomas Pollard, Jay L. Banks, Glide: a new approach for rapid, accurate docking and scoring. 2. Enrichment factors in database screening. Journal of Medicinal Chemistry. ,vol. 47, pp. 1750- 1759 ,(2004) , 10.1021/JM030644S