Engineering in complex systems

作者: Matthias Bujara , Sven Panke

DOI: 10.1016/J.COPBIO.2010.07.007

关键词:

摘要: The implementation of the engineering design cycle measure, model, manipulate would drastically enhance success rate biotechnological designs. Recent progress for three elements suggests that scope traditional paradigm in biotechnology is expanding. Substantial advances were made dynamic vivo analysis metabolism, which essential accurate prediction metabolic pathway behavior. Novel methods require variable degrees system knowledge facilitate manipulation. combinatorial testing pre-characterized parts particularly promising, because it can profit from automation and limits search space. Finally, conceptual orthogonalizing cells should reliability designs future. Coupled to improved silico models these allow a more rational systems.

参考文章(40)
Tae Seok Moon, John E. Dueber, Eric Shiue, Kristala L. Jones Prather, Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli Metabolic Engineering. ,vol. 12, pp. 298- 305 ,(2010) , 10.1016/J.YMBEN.2010.01.003
Daniel G Gibson, Lei Young, Ray-Yuan Chuang, J Craig Venter, Clyde A Hutchison, Hamilton O Smith, Enzymatic assembly of DNA molecules up to several hundred kilobases Nature Methods. ,vol. 6, pp. 343- 345 ,(2009) , 10.1038/NMETH.1318
Neema Jamshidi, Bernhard Ø. Palsson, Top-Down Analysis of Temporal Hierarchy in Biochemical Reaction Networks PLoS Computational Biology. ,vol. 4, pp. e1000177- ,(2008) , 10.1371/JOURNAL.PCBI.1000177
Jochen Schaub, Matthias Reuss, In vivodynamics of glycolysis inEscherichia colishows need for growth-rate dependent metabolome analysis Biotechnology Progress. ,vol. 24, pp. 1402- 1407 ,(2008) , 10.1002/BTPR.59
A. Bar-Even, E. Noor, N. E. Lewis, R. Milo, Design and analysis of synthetic carbon fixation pathways. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 107, pp. 8889- 8894 ,(2010) , 10.1073/PNAS.0907176107
Yoshihiro Usuda, Yosuke Nishio, Shintaro Iwatani, Stephen J. Van Dien, Akira Imaizumi, Kazutaka Shimbo, Naoko Kageyama, Daigo Iwahata, Hiroshi Miyano, Kazuhiko Matsui, Dynamic modeling of Escherichia coli metabolic and regulatory systems for amino-acid production Journal of Biotechnology. ,vol. 147, pp. 17- 30 ,(2010) , 10.1016/J.JBIOTEC.2010.02.018
D. G. Gibson, J. I. Glass, C. Lartigue, V. N. Noskov, R.-Y. Chuang, M. A. Algire, G. A. Benders, M. G. Montague, L. Ma, M. M. Moodie, C. Merryman, S. Vashee, R. Krishnakumar, N. Assad-Garcia, C. Andrews-Pfannkoch, E. A. Denisova, L. Young, Z.-Q. Qi, T. H. Segall-Shapiro, C. H. Calvey, P. P. Parmar, C. A. Hutchison, H. O. Smith, J. C. Venter, Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome Science. ,vol. 329, pp. 52- 56 ,(2010) , 10.1126/SCIENCE.1190719
Sebastian Aljoscha Wahl, Katharina Nöh, Wolfgang Wiechert, 13C labeling experiments at metabolic nonstationary conditions : an exploratory study BMC Bioinformatics. ,vol. 9, pp. 152- 152 ,(2008) , 10.1186/1471-2105-9-152
Nicola Zamboni, Sarah-Maria Fendt, Martin Rühl, Uwe Sauer, 13 C-based metabolic flux analysis Nature Protocols. ,vol. 4, pp. 878- 892 ,(2009) , 10.1038/NPROT.2009.58
Heinz Neumann, Kaihang Wang, Lloyd Davis, Maria Garcia-Alai, Jason W. Chin, Encoding multiple unnatural amino acids via evolution of a quadruplet-decoding ribosome Nature. ,vol. 464, pp. 441- 444 ,(2010) , 10.1038/NATURE08817