Generation of Molecular Models and Pathways

Baris Hancioglu, John J. Tyson, A mathematical model of mitotic exit in budding yeast: the role of Polo kinase. PLOS ONE. ,vol. 7, ,(2012) , 10.1371/JOURNAL.PONE.0030810

H DEJONG, J GOUZE, C HERNANDEZ, M PAGE, T SARI, J GEISELMANN, Qualitative Simulation of Genetic Regulatory Networks Using Piecewise-Linear Models Bulletin of Mathematical Biology. ,vol. 66, pp. 301- 340 ,(2004) , 10.1016/J.BULM.2003.08.010

Lars Juhl Jensen, Jasmin Saric, Peer Bork, Literature mining for the biologist: from information retrieval to biological discovery. Nature Reviews Genetics. ,vol. 7, pp. 119- 129 ,(2006) , 10.1038/NRG1768

Feng He, Rudi Balling, An-Ping Zeng, Reverse engineering and verification of gene networks: principles, assumptions, and limitations of present methods and future perspectives. Journal of Biotechnology. ,vol. 144, pp. 190- 203 ,(2009) , 10.1016/J.JBIOTEC.2009.07.013

Luis Mendoza, Fátima Pardo, A robust model to describe the differentiation of T-helper cells Theory in Biosciences. ,vol. 129, pp. 283- 293 ,(2010) , 10.1007/S12064-010-0112-X

Ilya Shmulevich, Ilya Gluhovsky, Ronaldo F. Hashimoto, Edward R. Dougherty, Wei Zhang, Steady-state analysis of genetic regulatory networks modelled by probabilistic boolean networks. Comparative and Functional Genomics. ,vol. 4, pp. 601- 608 ,(2003) , 10.1002/CFG.342

Felipe Leal Valentim, Simon van Mourik, David Posé, Min C. Kim, Markus Schmid, Roeland C. H. J. van Ham, Marco Busscher, Gabino F. Sanchez-Perez, Jaap Molenaar, Gerco C. Angenent, Richard G. H. Immink, Aalt D. J. van Dijk, A Quantitative and Dynamic Model of the Arabidopsis Flowering Time Gene Regulatory Network PLOS ONE. ,vol. 10, ,(2015) , 10.1371/JOURNAL.PONE.0116973

Bree B. Aldridge, Julio Saez-Rodriguez, Jeremy L. Muhlich, Peter K. Sorger, Douglas A. Lauffenburger, Fuzzy Logic Analysis of Kinase Pathway Crosstalk in TNF/EGF/Insulin-Induced Signaling PLoS Computational Biology. ,vol. 5, pp. e1000340- ,(2009) , 10.1371/JOURNAL.PCBI.1000340

J. Shu, M. L. Shuler, A mathematical model for the growth of a single cell of E. coli on a glucose/glutamine/ammonium medium. Biotechnology and Bioengineering. ,vol. 33, pp. 1117- 1126 ,(1989) , 10.1002/BIT.260330907

Kenneth J Kauffman, Purusharth Prakash, Jeremy S Edwards, Advances in flux balance analysis Current Opinion in Biotechnology. ,vol. 14, pp. 491- 496 ,(2003) , 10.1016/J.COPBIO.2003.08.001