Genome-Wide Reprogramming of Transcript Architecture by Temperature Specifies the Developmental States of the Human Pathogen Histoplasma.

作者: Sarah A. Gilmore , Mark Voorhies , Dana Gebhart , Anita Sil

DOI: 10.1371/JOURNAL.PGEN.1005395

关键词:

摘要: Eukaryotic cells integrate layers of gene regulation to coordinate complex cellular processes; however, mechanisms post-transcriptional remain poorly studied. The human fungal pathogen Histoplasma capsulatum (Hc) responds environmental or host temperature by initiating unique transcriptional programs specify multicellular (hyphae) unicellular (yeast) developmental states that function in infectivity pathogenesis, respectively. Here we used recent advances next-generation sequencing uncover a novel re-programming transcript length between Hc cell types. We found ~2% percent transcripts exhibit 5’ leader sequences differ markedly morphogenetic states. Ribosome density and mRNA abundance measurements differential revealed nuanced translational regulation. One such class regulated longer exhibited tight repression. Further examination these dually repressed genes some control morphology their strict is necessary for the make appropriate decisions response temperature.

参考文章(82)
Sarah J. Moore, Jennifer R. Cochran, Engineering knottins as novel binding agents. Methods in Enzymology. ,vol. 503, pp. 223- 251 ,(2012) , 10.1016/B978-0-12-396962-0.00009-4
John WB Hershey, Michael Mathews, Nahum Sonenberg, None, Translational control of gene expression Cold Spring Harbor Laboratory Press. ,(2000)
G Lynn Law, Kellie S Bickel, Vivian L MacKay, David R Morris, The undertranslated transcriptome reveals widespread translational silencing by alternative 5' transcript leaders Genome Biology. ,vol. 6, pp. 1- 15 ,(2005) , 10.1186/GB-2005-6-13-R111
Sarah A. Gilmore, Shamoon Naseem, James B. Konopka, Anita Sil, N-acetylglucosamine (GlcNAc) Triggers a Rapid, Temperature-Responsive Morphogenetic Program in Thermally Dimorphic Fungi PLoS Genetics. ,vol. 9, pp. e1003799- ,(2013) , 10.1371/JOURNAL.PGEN.1003799
Lukas Käll, Anders Krogh, Erik L.L Sonnhammer, A combined transmembrane topology and signal peptide prediction method. Journal of Molecular Biology. ,vol. 338, pp. 1027- 1036 ,(2004) , 10.1016/J.JMB.2004.03.016
Martin Werle, Thierry Schmitz, Hong-Lei Huang, Alexander Wentzel, Harald Kolmar, Andreas Bernkop-Schnürch, The potential of cystine-knot microproteins as novel pharmacophoric scaffolds in oral peptide drug delivery. Journal of Drug Targeting. ,vol. 14, pp. 137- 146 ,(2006) , 10.1080/10611860600648254
Paul K. Pallaghy, Raymond S. Norton, Katherine J. Nielsen, David J. Craik, A common structural motif incorporating a cystine knot and a triple-stranded beta-sheet in toxic and inhibitory polypeptides. Protein Science. ,vol. 3, pp. 1833- 1839 ,(1994) , 10.1002/PRO.5560031022
Anita Sil, S Beyhan, M Gutierrez, M Voorhies, A Temperature-Responsive Network Links Cell Shape and Virulence Traits in a Primary Fungal Pathogen PLoS Biology. ,vol. 11, pp. e1001614- ,(2013) , 10.1371/JOURNAL.PBIO.1001614
Adam Roberts, Lior Pachter, Streaming fragment assignment for real-time analysis of sequencing experiments Nature Methods. ,vol. 10, pp. 71- 73 ,(2013) , 10.1038/NMETH.2251