A modular database architecture enabled to comparative sequence analysis
作者： Paola Bonfante , Francesca Cordero , Stefano Ghignone , Dino Ienco , Luisa Lanfranco
DOI: 10.1007/978-3-642-23740-9_6
关键词:
摘要: The beginning of post-genomic era is characterized by a rising numbers public collected genomes. evolutionary relationship among these genomes may be caught means the comparative analysis sequences, in order to identify both homologous and noncoding functional elements. In this paper we report on on-going BIOBITS project. It focused studies concerning bacterial endosymbionts, since they offer an excellent model investigate important biological events, such as organelle evolution, genome reduction, transfer genetic information host lineages. goal two-side: one hand, it pursues logical data representation genomic proteomic components. On other aims at development software modules allowing user retrieve analyze flexible way.
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sci-hub.st 参考文章(41)
Ian Watson, Applying Case-Based Reasoning: Techniques for Enterprise Systems ,(1997)
Stefania Montani, Alessio Bottrighi, Giorgio Leonardi, Luigi Portinale, Paolo Terenziani, Multi-level Abstractions and Multi-dimensional Retrieval of Cases with Time Series Features international conference on case based reasoning. pp. 225- 239 ,(2009) , 10.1007/978-3-642-02998-1_17
Clyde A. Smith, Structure, Function and Dynamics in the mur Family of Bacterial Cell Wall Ligases Journal of Molecular Biology. ,vol. 362, pp. 640- 655 ,(2006) , 10.1016/J.JMB.2006.07.066
Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Edouard De Castro, Petra S Langendijk-Genevaux, Marco Pagni, Christian JA Sigrist, The PROSITE database Nucleic Acids Research. ,vol. 34, pp. 227- 230 ,(2006) , 10.1093/NAR/GKJ063
Ying Xu, Computational Challenges in Deciphering Genomic Structures of Bacteria Journal of Computer Science and Technology. ,vol. 25, pp. 53- 70 ,(2010) , 10.1007/S11390-010-9305-5
Karen Eilbeck, Suzanna E. Lewis, Sequence Ontology Annotation Guide Comparative and Functional Genomics. ,vol. 5, pp. 642- 647 ,(2004) , 10.1002/CFG.446
P. J. Kersey, D. Lawson, E. Birney, P. S. Derwent, M. Haimel, J. Herrero, S. Keenan, A. Kerhornou, G. Koscielny, A. Kähäri, R. J. Kinsella, E. Kulesha, U. Maheswari, K. Megy, M. Nuhn, G. Proctor, D. Staines, F. Valentin, A. J. Vilella, A. Yates, Ensembl Genomes: Extending Ensembl across the taxonomic space Nucleic Acids Research. ,vol. 38, pp. 563- 569 ,(2010) , 10.1093/NAR/GKP871
Yuval Shahar, A framework for knowledge-based temporal abstraction Artificial Intelligence. ,vol. 90, pp. 79- 133 ,(1997) , 10.1016/S0004-3702(96)00025-2
Fabiola M Carvalho, Rangel C Souza, Fernando G Barcellos, Mariangela Hungria, Ana Tereza R Vasconcelos, Genomic and evolutionary comparisons of diazotrophic and pathogenic bacteria of the order Rhizobiales BMC Microbiology. ,vol. 10, pp. 37- 37 ,(2010) , 10.1186/1471-2180-10-37
Torsten Thomas, Doug Rusch, Matt Z DeMaere, Pui Yi Yung, Matt Lewis, Aaron Halpern, Karla B Heidelberg, Suhelen Egan, Peter D Steinberg, Staffan Kjelleberg, None, Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis The ISME Journal. ,vol. 4, pp. 1557- 1567 ,(2010) , 10.1038/ISMEJ.2010.74