Grapevine powdery mildew resistance and susceptibility loci identified on a high-resolution SNP map

作者: Paola Barba , Lance Cadle-Davidson , James Harriman , Jeffrey C. Glaubitz , Siraprapa Brooks

DOI: 10.1007/S00122-013-2202-X

关键词:

摘要: Improved efficacy and durability of powdery mildew resistance can be enhanced via knowledge the genetics susceptibility coupled with development high-resolution maps to facilitate stacking multiple genes other desirable traits. We studied inheritance (Erysiphe necator) wild Vitis rupestris B38 cultivated V. vinifera ‘Chardonnay’, finding evidence for quantitative variation. Molecular markers were identified using genotyping-by-sequencing, resulting in 16,833 single nucleotide polymorphisms (SNPs) based on alignment ‘PN40024’ reference genome sequence. With an average density 36 SNPs/Mbp uniform coverage genome, this 17K set was used identify 11 SNPs chromosome 7 associated a locus from ten 9 ‘Chardonnay’ marker association linkage disequilibrium analysis. Linkage (1,146 SNPs) (1,215 constructed corroborate named Sen1 (Susceptibility Erysiphe necator 1), providing first insight into vinifera. The identification background negative selection among breeding progenies. This work improves our understanding nature while applying next-generation sequencing tools advance grapevine genomics breeding.

参考文章(41)
R. Eibach, E. Zyprian, R. Töpfer, The use of molecular markers for pyramidizing resistance genes in grapevine breeding. Proceedings of the IX International Conference on Grape Genetics and Breeding, Udine, Italy, 2-6 June 2006.. pp. 551- 558 ,(2009) , 10.17660/ACTAHORTIC.2009.827.96
ANGELA FEECHAN, SAMUELA KABBARA, IAN B. DRY, Mechanisms of powdery mildew resistance in the Vitaceae family. Molecular Plant Pathology. ,vol. 12, pp. 263- 274 ,(2011) , 10.1111/J.1364-3703.2010.00668.X
Eva Zyprian, R. Eibach, L. Welter, Reinhard Töpfer, The use of molecular markers for pyramiding resistance genes in grapevine breeding Vitis: Journal of Grapevine Research. ,vol. 46, pp. 120- 125 ,(2015) , 10.5073/VITIS.2007.46.120-124
A. Doligez, A. F. Adam-Blondon, G. Cipriani, G. Di Gaspero, V. Laucou, D. Merdinoglu, C. P. Meredith, S. Riaz, C. Roux, P. This, An integrated SSR map of grapevine based on five mapping populations. Theoretical and Applied Genetics. ,vol. 113, pp. 369- 382 ,(2006) , 10.1007/S00122-006-0295-1
G. Di Gaspero, G. Cipriani, A.-F. Adam-Blondon, R. Testolin, Linkage maps of grapevine displaying the chromosomal locations of 420 microsatellite markers and 82 markers for R-gene candidates. Theoretical and Applied Genetics. ,vol. 114, pp. 1249- 1263 ,(2007) , 10.1007/S00122-007-0516-2
D. A. G., R. C. Pearson, A. C. Goheen, Compendium of grape diseases. Mycologia. ,vol. 81, pp. 176- ,(1989) , 10.2307/3759482
Jeffrey C. Glaubitz, Terry M. Casstevens, Fei Lu, James Harriman, Robert J. Elshire, Qi Sun, Edward S. Buckler, TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline PLOS ONE. ,vol. 9, ,(2014) , 10.1371/JOURNAL.PONE.0090346
Jesse A. Poland, Peter J. Balint-Kurti, Randall J. Wisser, Richard C. Pratt, Rebecca J. Nelson, Shades of gray: the world of quantitative disease resistance. Trends in Plant Science. ,vol. 14, pp. 21- 29 ,(2009) , 10.1016/J.TPLANTS.2008.10.006
S. Riaz, G. S. Dangl, K. J. Edwards, C. P. Meredith, A microsatellite marker based framework linkage map of Vitis vinifera L. Theoretical and Applied Genetics. ,vol. 108, pp. 864- 872 ,(2004) , 10.1007/S00122-003-1488-5
Chrystel Deulvot, Hélène Charrel, Amandine Marty, Françoise Jacquin, Cécile Donnadieu, Isabelle Lejeune-Hénaut, Judith Burstin, Grégoire Aubert, Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea BMC Genomics. ,vol. 11, pp. 468- 468 ,(2010) , 10.1186/1471-2164-11-468