The Impact of Antimalarial Resistance on the Genetic Structure of Plasmodium falciparum in the DRC

作者: Robert Verity , Ozkan Aydemir , Nicholas F. Brazeau , Oliver J. Watson , Nicholas J. Hathaway

DOI: 10.1101/656561

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摘要: ABSTRACT The Democratic Republic of the Congo (DRC) harbors 11% global malaria cases, yet little is known about spatial and genetic structure parasite population in that country. We sequenced 2537 Plasmodium falciparum infections, including a nationally representative sample from DRC samples surrounding countries, using molecular inversion probes - novel high-throughput genotyping tool. identified an east-west divide haplotypes to confer resistance chloroquine sulfadoxine-pyrimethamine. Furthermore, we highly related parasites over large geographic distances, indicative gene flow migration. Our results were consistent with background isolation by distance combined effects selection for antimalarial drug resistance. This study provides high-resolution view across country Africa baseline how implementation programs may impact populations.

参考文章(41)
Geraldine A. Auwera, Mauricio O. Carneiro, Christopher Hartl, Ryan Poplin, Guillermo del Angel, Ami Levy‐Moonshine, Tadeusz Jordan, Khalid Shakir, David Roazen, Joel Thibault, Eric Banks, Kiran V. Garimella, David Altshuler, Stacey Gabriel, Mark A. DePristo, From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline Current protocols in human genetics. ,vol. 43, ,(2013) , 10.1002/0471250953.BI1110S43
Richard J. Pearce, Hirva Pota, Marie-Solange B. Evehe, El-Hadj Bâ, Ghyslain Mombo-Ngoma, Allen L. Malisa, Rosalynn Ord, Walter Inojosa, Alexandre Matondo, Diadier A. Diallo, Wilfred Mbacham, Ingrid V. van den Broek, Todd D. Swarthout, Asefaw Getachew, Seyoum Dejene, Martin P. Grobusch, Fanta Njie, Samuel Dunyo, Margaret Kweku, Seth Owusu-Agyei, Daniel Chandramohan, Maryline Bonnet, Jean-Paul Guthmann, Sian Clarke, Karen I. Barnes, Elizabeth Streat, Stark T. Katokele, Petrina Uusiku, Chris O. Agboghoroma, Olufunmilayo Y. Elegba, Badara Cissé, Ishraga E. A-Elbasit, Hayder A. Giha, S. Patrick Kachur, Caroline Lynch, John B. Rwakimari, Pascalina Chanda, Moonga Hawela, Brian Sharp, Inbarani Naidoo, Cally Roper, Multiple Origins and Regional Dispersal of Resistant dhps in African Plasmodium falciparum Malaria PLOS Medicine. ,vol. 6, ,(2009) , 10.1371/JOURNAL.PMED.1000055
Sabina Dahlström, Maria Isabel Veiga, Pedro Ferreira, Andreas Mårtensson, Akira Kaneko, Björn Andersson, Anders Björkman, José Pedro Gil, Diversity of the sarco/endoplasmic reticulum Ca2+-ATPase orthologue of Plasmodium falciparum (PfATP6) Infection, Genetics and Evolution. ,vol. 8, pp. 340- 345 ,(2008) , 10.1016/J.MEEGID.2008.02.002
Alexander Lex, Nils Gehlenborg, Hendrik Strobelt, Romain Vuillemot, Hanspeter Pfister, UpSet: Visualization of Intersecting Sets. IEEE Transactions on Visualization and Computer Graphics. ,vol. 20, pp. 1983- 1992 ,(2014) , 10.1109/TVCG.2014.2346248
Gustave Malécot, The mathematics of heredity ,(1970)
B. J. O'Roak, L. Vives, W. Fu, J. D. Egertson, I. B. Stanaway, I. G. Phelps, G. Carvill, A. Kumar, C. Lee, K. Ankenman, J. Munson, J. B. Hiatt, E. H. Turner, R. Levy, D. R. O'Day, N. Krumm, B. P. Coe, B. K. Martin, E. Borenstein, D. A. Nickerson, H. C. Mefford, D. Doherty, J. M. Akey, R. Bernier, E. E. Eichler, J. Shendure, Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders. Science. ,vol. 338, pp. 1619- 1622 ,(2012) , 10.1126/SCIENCE.1227764
Emily H Turner, Choli Lee, Sarah B Ng, Deborah A Nickerson, Jay Shendure, Massively parallel exon capture and library-free resequencing across 16 genomes. Nature Methods. ,vol. 6, pp. 315- 316 ,(2009) , 10.1038/NMETH.F.248
Margaret Carrel, Jaymin Patel, Steve M. Taylor, Mark Janko, Melchior Kashamuka Mwandagalirwa, Antoinette K. Tshefu, Ananias A. Escalante, Andrea McCollum, Md Tauqeer Alam, Venkatachalam Udhayakumar, Steven Meshnick, Michael Emch, The geography of malaria genetics in the Democratic Republic of Congo: A complex and fragmented landscape Social Science & Medicine. ,vol. 133, pp. 233- 241 ,(2015) , 10.1016/J.SOCSCIMED.2014.10.037
Steve M. Taylor, Alejandro L. Antonia, Christian M. Parobek, Jonathan J. Juliano, Mark Janko, Michael Emch, Md Tauqeer Alam, Venkatachalam Udhayakumar, Antoinette K. Tshefu, Steven R. Meshnick, Plasmodium falciparum sulfadoxine resistance is geographically and genetically clustered within the DR Congo Scientific Reports. ,vol. 3, pp. 1165- 1165 ,(2013) , 10.1038/SREP01165