Illumina and PacBio DNA sequencing data, de novo assembly and annotation of the genome of Aurantiochytrium limacinum strain CCAP_4062/1.
作者： Christian Morabito , Riccardo Aiese Cigliano , Eric Maréchal , Fabrice Rébeillé , Alberto Amato
DOI: 10.1016/J.DIB.2020.105729
关键词:
摘要: … sequenced, and this has fostered reverse genetics studies [10, 11]. Here we present the genome sequenced … clade as the type species of the genus Aurantiochytrium [1], A. limacinum …
mendeley.com参考文章(26)
Bruce J. Walker, Thomas Abeel, Terrance Shea, Margaret Priest, Amr Abouelliel, Sharadha Sakthikumar, Christina A. Cuomo, Qiandong Zeng, Jennifer Wortman, Sarah K. Young, Ashlee M. Earl, Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement PLoS ONE. ,vol. 9, pp. e112963- ,(2014) , 10.1371/JOURNAL.PONE.0112963
Adarsha Gupta, Serena Wilkens, Jacqui L. Adcock, Munish Puri, Colin J. Barrow, Pollen baiting facilitates the isolation of marine thraustochytrids with potential in omega-3 and biodiesel production Journal of Industrial Microbiology & Biotechnology. ,vol. 40, pp. 1231- 1240 ,(2013) , 10.1007/S10295-013-1324-0
Marco Falda, Stefano Toppo, Alessandro Pescarolo, Enrico Lavezzo, Barbara Di Camillo, Andrea Facchinetti, Elisa Cilia, Riccardo Velasco, Paolo Fontana, Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms BMC Bioinformatics. ,vol. 13, pp. 1- 9 ,(2012) , 10.1186/1471-2105-13-S4-S14
Alexey Gurevich, Vladislav Saveliev, Nikolay Vyahhi, Glenn Tesler, QUAST: quality assessment tool for genome assemblies Bioinformatics. ,vol. 29, pp. 1072- 1075 ,(2013) , 10.1093/BIOINFORMATICS/BTT086
Martin Hunt, Taisei Kikuchi, Mandy Sanders, Chris Newbold, Matthew Berriman, Thomas D Otto, REAPR: a universal tool for genome assembly evaluation. Genome Biology. ,vol. 14, pp. 1- 10 ,(2013) , 10.1186/GB-2013-14-5-R47
Leena Salmela, Eric Rivals, LoRDEC: accurate and efficient long read error correction. Bioinformatics. ,vol. 30, pp. 3506- 3514 ,(2014) , 10.1093/BIOINFORMATICS/BTU538
Nicolas L Bray, Harold Pimentel, Páll Melsted, Lior Pachter, Near-optimal probabilistic RNA-seq quantification Nature Biotechnology. ,vol. 34, pp. 525- 527 ,(2016) , 10.1038/NBT.3519
Bin Liu, Helga Ertesvåg, Inga Marie Aasen, Olav Vadstein, Trygve Brautaset, Tonje Marita Bjerkan Heggeset, Draft genome sequence of the docosahexaenoic acid producing thraustochytrid Aurantiochytrium sp. T66 Genomics data. ,vol. 8, pp. 115- 116 ,(2016) , 10.1016/J.GDATA.2016.04.013
Yunxuan Xie, Biswarup Sen, Guangyi Wang, Mining terpenoids production and biosynthetic pathway in thraustochytrids. Bioresource Technology. ,vol. 244, pp. 1269- 1280 ,(2017) , 10.1016/J.BIORTECH.2017.05.002
Takashi Watanabe, Ryo Sakiyama, Yuya Iimi, Satomi Sekine, Eriko Abe, Kazuko H. Nomura, Kazuya Nomura, Yohei Ishibashi, Nozomu Okino, Masahiro Hayashi, Makoto Ito, Regulation of TG accumulation and lipid droplet morphology by the novel TLDP1 in Aurantiochytrium limacinum F26-b. Journal of Lipid Research. ,vol. 58, pp. 2334- 2347 ,(2017) , 10.1194/JLR.M079897