参考文章(144)
W. F. Drew Bennett, D. Peter Tieleman, The importance of membrane defects-lessons from simulations. Accounts of Chemical Research. ,vol. 47, pp. 2244- 2251 ,(2014) , 10.1021/AR4002729
Alanas A. Petrauskas, Eduard A. Kolovanov, ACD/Log P method description Perspectives in Drug Discovery and Design. ,vol. 19, pp. 99- 116 ,(2000) , 10.1023/A:1008719622770
Mark James Abraham, Teemu Murtola, Roland Schulz, Szilárd Páll, Jeremy C. Smith, Berk Hess, Erik Lindahl, GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers SoftwareX. ,vol. 1, pp. 19- 25 ,(2015) , 10.1016/J.SOFTX.2015.06.001
H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, J. Hermans, Interaction Models for Water in Relation to Protein Hydration The Jerusalem Symposia on Quantum Chemistry and Biochemistry. pp. 331- 342 ,(1981) , 10.1007/978-94-015-7658-1_21
Sean R. Eddy, Non-coding RNA genes and the modern RNA world. Nature Reviews Genetics. ,vol. 2, pp. 919- 929 ,(2001) , 10.1038/35103511
Helgi I. Ingólfsson, Cesar A. Lopez, Jaakko J. Uusitalo, Djurre H. de Jong, Srinivasa M. Gopal, Xavier Periole, Siewert J. Marrink, The power of coarse graining in biomolecular simulations Wiley Interdisciplinary Reviews: Computational Molecular Science. ,vol. 4, pp. 225- 248 ,(2014) , 10.1002/WCMS.1169
Petr Šulc, Christian Matek, Ard A. Louis, Jonathan P. K. Doye, Ferdinando Randisi, Coarse-grained modelling of supercoiled RNA. Journal of Chemical Physics. ,vol. 143, pp. 243122- 243122 ,(2015) , 10.1063/1.4933066
Xiaoqiang Wang, Traci M. Tanaka Hall, Structural basis for recognition of AU-rich element RNA by the HuD protein. Nature Structural & Molecular Biology. ,vol. 8, pp. 141- 145 ,(2001) , 10.1038/84131
Alan A. Chen, David E. Draper, Rohit V. Pappu, Molecular simulation studies of monovalent counterion-mediated interactions in a model RNA kissing loop. Journal of Molecular Biology. ,vol. 390, pp. 805- 819 ,(2009) , 10.1016/J.JMB.2009.05.071
Tamar Schlick, Wilma K. Olson, Supercoiled DNA energetics and dynamics by computer simulation Journal of Molecular Biology. ,vol. 223, pp. 1089- 1119 ,(1992) , 10.1016/0022-2836(92)90263-J