Quantitative Structure-Activity Relationship and Classification Analysis of Diaryl Ureas Against Vascular Endothelial Growth Factor Receptor-2 Kinase Using Linear and Non-Linear Models

作者: Min Sun , Junqing Chen , Hongtao Wei , Shuangqing Yin , Yan Yang

DOI: 10.1111/J.1747-0285.2009.00814.X

关键词:

摘要: Quantitative structure-activity relationship analysis has been carried out for 74 diaryl ureas including aminobenzoisoxazole ureas, aminoindazole aminopyrazolopyridine against vascular endothelial growth factor receptor-2 kinase using both linear and non-linear models. Considering simplicity predictivity, multivariate regression was first employed in combination with various variable selection methods, forward selection, genetic algorithm enhanced replacement method based on descriptors generated by e-dragon software. Another model support vector also constructed compared. Performances of these models are rigorously validated leave-one-out cross-validation, fivefold cross-validation external validation. The significantly outperforms the others R(2) = 0.813 R(2)(pred) 0.809. Robustness predictive ability this is prudently evaluated. Moreover, to find most significant features associated difference between highly active compounds moderate ones, two classification discriminant machine were further developed. performance analysis, validation prediction accuracy reaching 0.838 0.857, respectively. resulting could act as an efficient strategy estimating inhibiting activity novel provide some insights into structural related biological compounds.

参考文章(36)
P. Robert, Y. Escoufier, A Unifying Tool for Linear Multivariate Statistical Methods: The RV- Coefficient Applied Statistics. ,vol. 25, pp. 257- 265 ,(1976) , 10.2307/2347233
Svante Wold, Lennart Eriksson, Sergio Clementi, Statistical Validation of QSAR Results Chemometric Methods in Molecular Design. pp. 309- 338 ,(1995) , 10.1002/9783527615452.CH5
Werner Risau, Mechanisms of angiogenesis Nature. ,vol. 386, pp. 671- 674 ,(1997) , 10.1038/386671A0
Najmeh Edraki, Bahram Hemmateenejad, Ramin Miri, Mehdi Khoshneviszade, QSAR study of Phenoxypyrimidine Derivatives as Potent Inhibitors of p38 Kinase using different chemometric tools. Chemical Biology & Drug Design. ,vol. 70, pp. 530- 539 ,(2007) , 10.1111/J.1747-0285.2007.00597.X
B. K. Sharma, S. K. Sharma, P. Singh, Susheela Sharma, Y. S. Prabhakar, Modeling of vascular endothelial growth factor receptor 2 (VEGFR2) kinase inhibitory activity of 2-anilino-5-aryloxazoles using chemometric tools Journal of Enzyme Inhibition and Medicinal Chemistry. ,vol. 24, pp. 86- 93 ,(2009) , 10.1080/14756360801915351
Jan H. Schuur, Paul Selzer, Johann Gasteiger, The Coding of the Three-Dimensional Structure of Molecules by Molecular Transforms and Its Application to Structure-Spectra Correlations and Studies of Biological Activity Journal of Chemical Information and Computer Sciences. ,vol. 36, pp. 334- 344 ,(1996) , 10.1021/CI950164C
Jiazhong Li, Jin Qin, Huanxiang Liu, Xiaojun Yao, Mancang Liu, Zhide Hu, In Silico Prediction of Inhibition Activity of Pyrazine–Pyridine Biheteroaryls as VEGFR‐2 Inhibitors Based on Least Squares Support Vector Machines Qsar & Combinatorial Science. ,vol. 27, pp. 157- 164 ,(2008) , 10.1002/QSAR.200630154
Siavash Riahi, Eslam Pourbasheer, Rassoul Dinarvand, Mohammad Reza Ganjali, Parviz Norouzi, Exploring QSARs for Antiviral Activity of 4-Alkylamino-6-(2-hydroxyethyl)-2-methylthiopyrimidines by Support Vector Machine Chemical Biology & Drug Design. ,vol. 72, pp. 205- 216 ,(2008) , 10.1111/J.1747-0285.2008.00695.X
Judah Folkman, Patricia A. D'Amore, Blood Vessel Formation: What Is Its Molecular Basis? Cell. ,vol. 87, pp. 1153- 1155 ,(1996) , 10.1016/S0092-8674(00)81810-3