OligoDesign: optimal design of LNA (locked nucleic acid) oligonucleotide capture probes for gene expression profiling
作者： Niels Tolstrup , Peter S Nielsen , Jens G Kolberg , Annett M Frankel , Henrik Vissing
DOI: 10.1093/NAR/GKG580
关键词:
摘要: … and secondary structure for LNA substituted oligonucleotides, as well as secondary structure … microarrays enable detection of alternatively spliced mRNAs and discrimination between …
oup.com
core.ac.uk
paperity.org
oxfordjournals.org参考文章(32)
M. Zuker, D. H. Mathews, D. H. Turner, Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide Barciszewski, Jan , Clark, Brian F C NATO Science Series. pp. 11- 43 ,(1999) , 10.1007/978-94-011-4485-8_2
Earl Cox, The fuzzy systems handbook: a practitioner's guide to building, using, and maintaining fuzzy systems Academic Press Professional, Inc.. ,(1994)
Michael B. Eisen, Patrick O. Brown, DNA arrays for analysis of gene expression. Methods in Enzymology. ,vol. 303, pp. 179- 205 ,(1999) , 10.1016/S0076-6879(99)03014-1
Hao Chen, Burt M Sharp, Oliz, a suite of Perl scripts that assist in the design of microarrays using 50mer oligonucleotides from the 3' untranslated region BMC Bioinformatics. ,vol. 3, pp. 27- 27 ,(2002) , 10.1186/1471-2105-3-27
M. Schena, D. Shalon, R. W. Davis, P. O. Brown, Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray Science. ,vol. 270, pp. 467- 470 ,(1995) , 10.1126/SCIENCE.270.5235.467
Hongyue Dai, Michael Meyer, Sergey Stepaniants, Michael Ziman, Roland Stoughton, Use of hybridization kinetics for differentiating specific from non‐specific binding to oligonucleotide microarrays Nucleic Acids Research. ,vol. 30, ,(2002) , 10.1093/NAR/GNF085
Ruth Nussinov, Bruce Shapiro, Shu-Yun Le, Jacob V. Maizel, Speeding up the dynamic algorithm for planar RNA folding. Bellman Prize in Mathematical Biosciences. ,vol. 100, pp. 33- 47 ,(1990) , 10.1016/0025-5564(90)90046-2
David H. Mathews, Jeffrey Sabina, Michael Zuker, Douglas H. Turner, Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure Journal of Molecular Biology. ,vol. 288, pp. 911- 940 ,(1999) , 10.1006/JMBI.1999.2700
W. R. Pearson, D. J. Lipman, Improved tools for biological sequence comparison. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 85, pp. 2444- 2448 ,(1988) , 10.1073/PNAS.85.8.2444
Jeffrey F. Waring, Robert A. Jolly, Rita Ciurlionis, Pek Yee Lum, Jens T. Praestgaard, David C. Morfitt, Bruno Buratto, Chris Roberts, Eric Schadt, Roger G. Ulrich, Clustering of hepatotoxins based on mechanism of toxicity using gene expression profiles. Toxicology and Applied Pharmacology. ,vol. 175, pp. 28- 42 ,(2001) , 10.1006/TAAP.2001.9243