Elastic source selection for in vivo imaging of neuronal ensembles

作者: Logan Grosenick , Todd Anderson , Stephen J. Smith

DOI: 10.1109/ISBI.2009.5193292

关键词:

摘要: Advances in microscopy and biochemistry now allow investigators to image the calcium dynamics of hundreds thousands neurons awake behaving animals. However, as speed resolution such techniques rapidly increase, so do dimension complexity data collected. ICA has been widely employed reveal independent non-Gaussian sources underlying large sets consisting mixed sources. We apply a recently developed sparse regression method, Elastic Net (ENET), columns mixing matrix Independent Component Analysis (ICA) procedure. This method automatically selects only those relevant dependent variable interest. Further, because is linear operator, we can easily project “relevance filtered” back into native space for interpretation. demonstrate utility this on 3D imaging collected from optic tectum an larval zebrafish watching prey-like stimulus.

参考文章(11)
Robert Tibshirani, Trevor Hastie, Jerome H. Friedman, The Elements of Statistical Learning ,(2001)
Erkki Oja, Aapo Hyvarinen, Juha Karhunen, Independent Component Analysis ,(2001)
Germán Sumbre, Akira Muto, Herwig Baier, Mu-ming Poo, Entrained rhythmic activities of neuronal ensembles as perceptual memory of time interval Nature. ,vol. 456, pp. 102- 106 ,(2008) , 10.1038/NATURE07351
Marc Levoy, Ren Ng, Andrew Adams, Matthew Footer, Mark Horowitz, Light field microscopy international conference on computer graphics and interactive techniques. ,vol. 25, pp. 924- 934 ,(2006) , 10.1145/1141911.1141976
Robert Tibshirani, Trevor Hastie, Berwin A. Turlach, Bradley Efron, Jean Michel Loubes, Jean Michel Loubes, Hemant Ishwaran, Robert A. Stine, Keith Knight, Sanford Weisberg, Saharon Rosset, Saharon Rosset, Iain Johnstone, Pascal Massart, Pascal Massart, David Madigan, J. I. Zhu, Greg Ridgeway, Greg Ridgeway, Least angle regression Annals of Statistics. ,vol. 32, pp. 407- 499 ,(2004) , 10.1214/009053604000000067
lldiko E. Frank, Jerome H. Friedman, A Statistical View of Some Chemometrics Regression Tools Technometrics. ,vol. 35, pp. 109- 135 ,(1993) , 10.1080/00401706.1993.10485033
Hui Zou, Trevor Hastie, Regularization and variable selection via the elastic net Journal of The Royal Statistical Society Series B-statistical Methodology. ,vol. 67, pp. 301- 320 ,(2005) , 10.1111/J.1467-9868.2005.00503.X
Pavan Ramdya, Florian Engert, Emergence of binocular functional properties in a monocular neural circuit Nature Neuroscience. ,vol. 11, pp. 1083- 1090 ,(2008) , 10.1038/NN.2166
Robert Tibshirani, Regression Shrinkage and Selection Via the Lasso Journal of the Royal Statistical Society: Series B (Methodological). ,vol. 58, pp. 267- 288 ,(1996) , 10.1111/J.2517-6161.1996.TB02080.X