Optimizing RetroICor and RetroKCor corrections for multi-shot 3D FMRI acquisitions

作者: Rob H.N. Tijssen , Mark Jenkinson , Jonathan C.W. Brooks , Peter Jezzard , Karla L. Miller

DOI: 10.1016/J.NEUROIMAGE.2013.08.062

关键词:

摘要: Physiological noise, if unaccounted for, can drastically reduce the statistical significance of detected activation in FMRI. In this paper, we systematically optimize physiological noise regressions for multi-shot 3D FMRI data. First, investigate whether data are best corrected image space (RetroICor) or k-space (RetroKCor), which each segment be assigned its unique phase. addition, optimal regressor set is determined using Bayesian Information Criterion (BIC) a variety acquisitions corresponding to different contrasts and readouts. Our simulations experiments indicate that: (a) corrections more robust when performed on real/imaginary than magnitude/phase data; (b) do not outperform image-space corrections, despite ability synchronize phase acquisition time accurately; (c) model varied considerably between various techniques. These results suggest use tailored volume-wide regressors, by BIC other selection criteria, that achieves balance variance reduction potential over-fitting.

参考文章(34)
Karin Shmueli, Peter van Gelderen, Jacco A. de Zwart, Silvina G. Horovitz, Masaki Fukunaga, J. Martijn Jansma, Jeff H. Duyn, Low Frequency Fluctuations in the Cardiac Rate as a Source of Variance in the Resting-State fMRI BOLD Signal NeuroImage. ,vol. 38, pp. 306- 320 ,(2007) , 10.1016/J.NEUROIMAGE.2007.07.037
C. Triantafyllou, R.D. Hoge, G. Krueger, C.J. Wiggins, A. Potthast, G.C. Wiggins, L.L. Wald, Comparison of physiological noise at 1.5 T, 3 T and 7 T and optimization of fMRI acquisition parameters. NeuroImage. ,vol. 26, pp. 243- 250 ,(2005) , 10.1016/J.NEUROIMAGE.2005.01.007
Sigrid Friese, Uwe Hamhaber, Michael Erb, Uwe Klose, B-waves in cerebral and spinal cerebrospinal fluid pulsation measurement by magnetic resonance imaging. Journal of Computer Assisted Tomography. ,vol. 28, pp. 255- 262 ,(2004) , 10.1097/00004728-200403000-00016
Tyler B. Jones, Peter A. Bandettini, Rasmus M. Birn, Integration of motion correction and physiological noise regression in fMRI. NeuroImage. ,vol. 42, pp. 582- 590 ,(2008) , 10.1016/J.NEUROIMAGE.2008.05.019
Rasmus M. Birn, Jason B. Diamond, Monica A. Smith, Peter A. Bandettini, Separating respiratory-variation-related fluctuations from neuronal-activity-related fluctuations in fMRI. NeuroImage. ,vol. 31, pp. 1536- 1548 ,(2006) , 10.1016/J.NEUROIMAGE.2006.02.048
Gisela E. Hagberg, Marta Bianciardi, Valentina Brainovich, Antonino Mario Cassarà, Bruno Maraviglia, The effect of physiological noise in phase functional magnetic resonance imaging: from blood oxygen level-dependent effects to direct detection of neuronal currents. Magnetic Resonance Imaging. ,vol. 26, pp. 1026- 1040 ,(2008) , 10.1016/J.MRI.2008.01.010
Rob H.N. Tijssen, Thomas W. Okell, Karla L. Miller, Real-time cardiac synchronization with fixed volume frame rate for reducing physiological instabilities in 3D FMRI NeuroImage. ,vol. 57, pp. 1364- 1375 ,(2011) , 10.1016/J.NEUROIMAGE.2011.05.070
Karl J. Friston, Steven Williams, Robert Howard, Richard S. J. Frackowiak, Robert Turner, Movement-Related effects in fMRI time-series Magnetic Resonance in Medicine. ,vol. 35, pp. 346- 355 ,(1996) , 10.1002/MRM.1910350312
Stephen M Smith, Mark Jenkinson, Mark W Woolrich, Christian F Beckmann, Timothy EJ Behrens, Heidi Johansen-Berg, Peter R Bannister, Marilena De Luca, Ivana Drobnjak, David E Flitney, Rami K Niazy, James Saunders, John Vickers, Yongyue Zhang, Nicola De Stefano, J Michael Brady, Paul M Matthews, None, Advances in functional and structural MR image analysis and implementation as FSL NeuroImage. ,vol. 23, pp. S208- S219 ,(2004) , 10.1016/J.NEUROIMAGE.2004.07.051
Catie Chang, John P. Cunningham, Gary H. Glover, Influence of heart rate on the BOLD signal: the cardiac response function. NeuroImage. ,vol. 44, pp. 857- 869 ,(2009) , 10.1016/J.NEUROIMAGE.2008.09.029