Predicting substrate selectivity between UGT1A9 and UGT1A10 using molecular modelling and molecular dynamics approach

作者: Satya Prakash Tripathi , Rameshwar Prajapati , Neha Verma , Abhay T. Sangamwar

DOI: 10.1080/08927022.2015.1044451

关键词:

摘要: Uridine 5′-diphospho-glucuronosyltransferase-1A9 (UGT1A9) expressed in the liver, shows good sequence identity with UGT1A10, intestine. Both uridine 5′-diphospho-glucuronosyltransferase (UGT) isoforms show comprehensive overlapping substrate selectivity but there are differences stereoselectivity, regiospecificity and rate of glucuronidation substrates. Multiple alignment analyses UGT1A9 UGT1A10 showed that 13% residues N-terminal domain (NTD) non-identical between them. Herein, authors attempted homology modelling validation using software tools reported mutagenic studies. A molecular docking study known substrates is performed on models. The ranging from 111 to 117 were identified play a central role selectivity. However, binding by Ser111, Gly115 Leu117 Gly111, Asp11...

参考文章(71)
M. J. D. Powell, A fast algorithm for nonlinearly constrained optimization calculations Springer Berlin Heidelberg. pp. 144- 157 ,(1978) , 10.1007/BFB0067703
Jacqueline Ramírez, Lalitha Iyer, Kim Journault, Patrick Bélanger, Federico Innocenti, Mark J. Ratain, Chantal Guillemette, In vitro characterization of hepatic flavopiridol metabolism using human liver microsomes and recombinant UGT enzymes. Pharmaceutical Research. ,vol. 19, pp. 588- 594 ,(2002) , 10.1023/A:1015341726183
Rory Remmel, Swati Nagar, Upendra Argikar, Conjugative Metabolism of Drugs John Wiley & Sons, Inc.. pp. 37- 88 ,(2007) , 10.1002/9780470191699.CH3
Masuhiro Nishimura, Akiko Koeda, Hiroshi Morikawa, Tetsuo Satoh, Shizuo Narimatsu, Shinsaku Naito, Tissue-Specific mRNA Expression Profiles of Drug-Metabolizing Enzymes and Transporters in the Cynomolgus Monkey Drug Metabolism and Pharmacokinetics. ,vol. 24, pp. 139- 144 ,(2009) , 10.2133/DMPK.24.139
Claire Senay, Eric Battaglia, Guangping Chen, Robert Breton, Sylvie Fournel-Gigleux, Jacques Magdalou, Anna Radominska-Pandya, Photoaffinity Labeling of the Aglycon Binding Site of the Recombinant Human Liver UDP-Glucuronosyltransferase UGT1A6 with 7-Azido-4-methylcoumarin Archives of Biochemistry and Biophysics. ,vol. 368, pp. 75- 84 ,(1999) , 10.1006/ABBI.1999.1300
William L. Jorgensen, Jayaraman Chandrasekhar, Jeffry D. Madura, Roger W. Impey, Michael L. Klein, Comparison of simple potential functions for simulating liquid water The Journal of Chemical Physics. ,vol. 79, pp. 926- 935 ,(1983) , 10.1063/1.445869
Kuo-Chen Chou, Structural bioinformatics and its impact to biomedical science. Current Medicinal Chemistry. ,vol. 11, pp. 2105- 2134 ,(2004) , 10.2174/0929867043364667
Tim O. Lankisch, Ulrike Moebius, Michael Wehmeier, Georg Behrens, Michael P. Manns, Reinhold E. Schmidt, Christian P. Strassburg, Gilbert's disease and atazanavir: From phenotype to UDP-glucuronosyltransferase haplotype Hepatology. ,vol. 44, pp. 1324- 1332 ,(2006) , 10.1002/HEP.21361
Peter I. Mackenzie, Ida S. Owens, Brian Burchell, K W Bock, Amos Bairoch, Alain Belanger, Sylvie Fournel Gigleux, Mitchell Green, Dean W. Hum, Takashi Iyanagi, Doron Lancet, Pierre Louisot, Jacques Magdalou, Jayanta Roy Chowdhury, Joseph K. Ritter, Thomas R. Tephly, Harry Schachter, Thomas Tephly, Keith F Tipton, Daniel W. Nebert, The UDP glycosyltransferase gene superfamily: recommended nomenclature update based on evolutionary divergence. Pharmacogenetics. ,vol. 7, pp. 255- 269 ,(1997) , 10.1097/00008571-199708000-00001