A Method for Rapid and Simultaneous Mapping of Genetic Loci and Introgression Sizes in Nematode Species

作者: Cheung Yan , Yu Bi , Da Yin , Zhongying Zhao

DOI: 10.1371/JOURNAL.PONE.0043770

关键词:

摘要: Caenorhabditis briggsae is emerging as an attractive model organism not only in studying comparative biology against C. elegans, but also developing novel experimentation avenues. In particular, recent identification of a new species, sp.9 with which it can mate and produce viable progeny provides opportunity for the genetics hybrid incompatibilities (HI) between two. Mapping specific HI locus demands repeated backcrossing to get hold genomic region underlying observed phenotype. To facilitate mapping loci sp.9, efficient method genetic map ideally consisting dominant markers are required systematic introgression fragments two species. We developed fast cost-effective high throughput resolution up 1 million bps briggsae. The takes advantage followed by PCR genotyping using primers. Importantly, results serve effective way estimating chromosomal position briggsae, size information fragment otherwise background. addition, helps generate line side-product that invaluable subsequent loci. will greatly construction pave isolation has so far been attempted nematode designed allele, be easily adapted any other type alleles species if sister pair feasible.

参考文章(37)
Steve Rozen, Helen Skaletsky, Primer3 on the WWW for general users and for biologist programmers. Methods of Molecular Biology. ,vol. 132, pp. 365- 386 ,(2000) , 10.1385/1-59259-192-2:365
Julie D. Thompson, Toby. J. Gibson, Des G. Higgins, Multiple Sequence Alignment Using ClustalW and ClustalX Current protocols in human genetics. ,(2003) , 10.1002/0471250953.BI0203S00
Joanna L. Kozlowska, Abeer R. Ahmad, Elnaz Jahesh, Asher D. Cutter, Genetic variation for postzygotic reproductive isolation between Caenorhabditis briggsae and Caenorhabditis sp. 9. Evolution. ,vol. 66, pp. 1180- 1195 ,(2012) , 10.1111/J.1558-5646.2011.01514.X
ASHER D. CUTTER, WEIANG YAN, NADEJDA TSVETKOV, SUPREET SUNIL, MARIE-ANNE FÉLIX, Molecular population genetics and phenotypic sensitivity to ethanol for a globally diverse sample of the nematode Caenorhabditis briggsae Molecular Ecology. ,vol. 19, pp. 798- 809 ,(2010) , 10.1111/J.1365-294X.2009.04491.X
David Collar, Vida Praitis, Elizabeth Casey, Judith Austin, Creation of low-copy integrated transgenic lines in Caenorhabditis elegans. Genetics. ,vol. 157, pp. 1217- 1226 ,(2001) , 10.1093/GENETICS/157.3.1217
Karin C Kiontke, Marie-Anne Félix, Michael Ailion, Matthew V Rockman, Christian Braendle, Jean-Baptiste Pénigault, David HA Fitch, A phylogeny and molecular barcodes for Caenorhabditis, with numerous new species from rotting fruits BMC Evolutionary Biology. ,vol. 11, pp. 339- 339 ,(2011) , 10.1186/1471-2148-11-339
H. S. Seidel, M. V. Rockman, L. Kruglyak, Widespread genetic incompatibility in C. elegans maintained by balancing selection. Science. ,vol. 319, pp. 589- 594 ,(2008) , 10.1126/SCIENCE.1151107
Zhongying Zhao, Thomas J. Boyle, Zhirong Bao, John I. Murray, Barbara Mericle, Robert H. Waterston, Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans Developmental Biology. ,vol. 314, pp. 93- 99 ,(2008) , 10.1016/J.YDBIO.2007.11.015
D. R. Matute, I. A. Butler, D. A. Turissini, J. A. Coyne, A Test of the Snowball Theory for the Rate of Evolution of Hybrid Incompatibilities Science. ,vol. 329, pp. 1518- 1521 ,(2010) , 10.1126/SCIENCE.1193440