Developing a Coarse-Grained Model for Bacterial Cell Walls: Evaluating Mechanical Properties and Free Energy Barriers
作者： Rakesh Vaiwala , Pradyumn Sharma , Mrinalini Puranik , K. Ganapathy Ayappa
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摘要: The bacterial cell envelope of Gram-negative bacteria is a complex biological barrier with multiple layers consisting the inner membrane, periplasm peptidoglycan, and outer membrane ...
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David Boal, Mechanics of the Cell: Membranes ,(2012) , 10.1017/CBO9781139022217
Mark James Abraham, Teemu Murtola, Roland Schulz, Szilárd Páll, Jeremy C. Smith, Berk Hess, Erik Lindahl, GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers SoftwareX. ,vol. 1, pp. 19- 25 ,(2015) , 10.1016/J.SOFTX.2015.06.001
H Labischinski, E W Goodell, A Goodell, M L Hochberg, Direct proof of a "more-than-single-layered" peptidoglycan architecture of Escherichia coli W7: a neutron small-angle scattering study. Journal of Bacteriology. ,vol. 173, pp. 751- 756 ,(1991) , 10.1128/JB.173.2.751-756.1991
W. Weidel, H. Pelzer, BAGSHAPED MACROMOLECULES--A NEW OUTLOOK ON BACTERIAL CELL WALLS. Advances in Enzymology and Related Areas of Molecular Biology. ,vol. 26, pp. 193- 232 ,(1964) , 10.1002/9780470122716.CH5
Lam T. Nguyen, James C. Gumbart, Morgan Beeby, Grant J. Jensen, Coarse-grained simulations of bacterial cell wall growth reveal that local coordination alone can be sufficient to maintain rod shape Proceedings of the National Academy of Sciences. ,vol. 112, pp. E3689- E3698 ,(2015) , 10.1073/PNAS.1504281112
B Glauner, J V Höltje, U Schwarz, The composition of the murein of Escherichia coli. Journal of Biological Chemistry. ,vol. 263, pp. 10088- 10095 ,(1988) , 10.1016/S0021-9258(19)81481-3
F B Wientjes, C L Woldringh, N Nanninga, Amount of peptidoglycan in cell walls of gram-negative bacteria. Journal of Bacteriology. ,vol. 173, pp. 7684- 7691 ,(1991) , 10.1128/JB.173.23.7684-7691.1991
L. Gan, S. Chen, G. J. Jensen, Molecular organization of Gram-negative peptidoglycan. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 105, pp. 18953- 18957 ,(2008) , 10.1073/PNAS.0808035105
J.P.R.B. Walton, D.J. Tildesley, J.S. Rowlinson, J.R. Henderson, The pressure tensor at the planar surface of a liquid Molecular Physics. ,vol. 48, pp. 1357- 1368 ,(1983) , 10.1080/00268978300100971
Thomas J. Piggot, Daniel A. Holdbrook, Syma Khalid, Electroporation of the E. coli and S. Aureus Membranes: Molecular Dynamics Simulations of Complex Bacterial Membranes Journal of Physical Chemistry B. ,vol. 115, pp. 13381- 13388 ,(2011) , 10.1021/JP207013V