Analysis of the Human Endogenous Coregulator Complexome

作者: Anna Malovannaya , Rainer B. Lanz , Sung Yun Jung , Yaroslava Bulynko , Nguyen T. Le

DOI: 10.1016/J.CELL.2011.05.006

关键词:

摘要: Elucidation of endogenous cellular protein-protein interactions and their networks is most desirable for biological studies. Here we report our study human coregulator protein complex obtained from integrative mass spectrometry-based analysis 3290 affinity purifications. By preserving weak during isolation utilizing high levels reciprocity in the large dataset, identified many unreported associations, such as a transcriptional network formed by ZMYND8, ZNF687, ZNF592. Furthermore, work revealed tiered interplay within that share common proteins, providing conceptual organization proteome composed minimal modules (MEMOs), isoforms (uniCOREs), regulatory complex-complex interaction (CCIs). This resource will effectively fill void linking correlative genomic studies with an understanding functions formulation testing future hypotheses.

参考文章(69)
Jun Yan, Halime Erdem, Rile Li, Yi Cai, Gustavo Ayala, Michael Ittmann, Li-yuan Yu-Lee, Sophia Y. Tsai, Ming-Jer Tsai, Steroid Receptor Coactivator-3/AIB1 Promotes Cell Migration and Invasiveness through Focal Adhesion Turnover and Matrix Metalloproteinase Expression Cancer Research. ,vol. 68, pp. 5460- 5468 ,(2008) , 10.1158/0008-5472.CAN-08-0955
Chao Li, Yao-Yun Liang, Xin-Hua Feng, Sophia Y. Tsai, Ming-Jer Tsai, Bert W. O'Malley, Essential Phosphatases and a Phospho-Degron Are Critical for Regulation of SRC-3/AIB1 Coactivator Function and Turnover Molecular Cell. ,vol. 31, pp. 835- 849 ,(2008) , 10.1016/J.MOLCEL.2008.07.019
G. Shao, D. R. Lilli, J. Patterson-Fortin, K. A. Coleman, D. E. Morrissey, R. A. Greenberg, The Rap80-BRCC36 de-ubiquitinating enzyme complex antagonizes RNF8-Ubc13-dependent ubiquitination events at DNA double strand breaks Proceedings of the National Academy of Sciences of the United States of America. ,vol. 106, pp. 3166- 3171 ,(2009) , 10.1073/PNAS.0807485106
Neil J. McKenna, Rainer B. Lanz, Bert W. O’Malley, Nuclear receptor coregulators: cellular and molecular biology. Endocrine Reviews. ,vol. 20, pp. 321- 344 ,(1999) , 10.1210/EDRV.20.3.0366
M.-A. Hakimi, D. A. Bochar, J. Chenoweth, W. S. Lane, G. Mandel, R. Shiekhattar, A core-BRAF35 complex containing histone deacetylase mediates repression of neuronal-specific genes Proceedings of the National Academy of Sciences of the United States of America. ,vol. 99, pp. 7420- 7425 ,(2002) , 10.1073/PNAS.112008599
Thomas Köcher, Giulio Superti-Furga, Mass spectrometry–based functional proteomics: from molecular machines to protein networks Nature Methods. ,vol. 4, pp. 807- 815 ,(2007) , 10.1038/NMETH1093
P. Andrew Futreal, Lachlan Coin, Mhairi Marshall, Thomas Down, Timothy Hubbard, Richard Wooster, Nazneen Rahman, Michael R. Stratton, A census of human cancer genes Nature Reviews Cancer. ,vol. 4, pp. 177- 183 ,(2004) , 10.1038/NRC1299
Loic Giot, Joel S Bader, C Brouwer, Amitabha Chaudhuri, Bing Kuang, Y Li, YL Hao, CE Ooi, Brian Godwin, E Vitols, G Vijayadamodar, Philippe Pochart, H Machineni, M Welsh, Y Kong, B Zerhusen, R Malcolm, Z Varrone, A Collis, M Minto, S Burgess, L McDaniel, E Stimpson, F Spriggs, J Williams, Kathryin Neurath, N Ioime, M Agee, E Voss, K Furtak, R Renzulli, N Aanensen, S Carrolla, E Bickelhaupt, Y Lazovatsky, A DaSilva, J Zhong, Clement A Stanyon, Russell L Finley Jr, Kevin P White, M Braverman, T Jarvie, S Gold, M Leach, J Knight, Richard A Shimkets, Michael P McKenna, John Chant, Jonathan M Rothberg, None, A Protein Interaction Map of Drosophila melanogaster Science. ,vol. 302, pp. 1727- 1736 ,(2003) , 10.1126/SCIENCE.1090289
David M. Lonard, Rainer B. Lanz, Bert W. O’Malley, Nuclear receptor coregulators and human disease. Endocrine Reviews. ,vol. 28, pp. 575- 587 ,(2008) , 10.1210/ER.2007-0012
Mathew E. Sowa, Eric J. Bennett, Steven P. Gygi, J. Wade Harper, Defining the Human Deubiquitinating Enzyme Interaction Landscape Cell. ,vol. 138, pp. 389- 403 ,(2009) , 10.1016/J.CELL.2009.04.042