Evolution of SR protein and hnRNP splicing regulatory factors.

作者: Anke Busch , Klemens J. Hertel

DOI: 10.1002/WRNA.100

关键词:

摘要: The splicing of pre-mRNAs is an essential step gene expression in eukaryotes. Introns are removed from split genes through the activities spliceosome, a large ribonuclear machine that conserved throughout eukaryotic lineage. While unicellular eukaryotes characterized by less complex splicing, pre-mRNA multicellular organisms often associated with extensive alternative significantly enriches their proteome. selection splice sites and exons permits to modulate patterns cell type-specific fashion, thus contributing functional diversification. Alternative regulated process mainly influenced regulators, such as SR proteins or hnRNPs. These modular factors have evolved common ancestor duplication events diverse group regulators mediate exon recognition sequence-specific binding pre-mRNAs. Given strong correlations between intron expansion, complexity emergence it argued increased presence hnRNP promoted evolution relaxation sequence requirements junctions.

参考文章(72)
Nuno L Barbosa-Morais, Maria Carmo-Fonseca, Samuel Aparício, Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion Genome Research. ,vol. 16, pp. 66- 77 ,(2005) , 10.1101/GR.3936206
X. D. Fu, T. Maniatis, The 35-kDa mammalian splicing factor SC35 mediates specific interactions between U1 and U2 small nuclear ribonucleoprotein particles at the 3' splice site. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 89, pp. 1725- 1729 ,(1992) , 10.1073/PNAS.89.5.1725
Amy E House, Kristen W Lynch, An exonic splicing silencer represses spliceosome assembly after ATP-dependent exon recognition Nature Structural & Molecular Biology. ,vol. 13, pp. 937- 944 ,(2006) , 10.1038/NSMB1149
Gil Ast, How did alternative splicing evolve Nature Reviews Genetics. ,vol. 5, pp. 773- 782 ,(2004) , 10.1038/NRG1451
Tracy L. Kress, Nevan J. Krogan, Christine Guthrie, A single SR-like protein, Npl3, promotes pre-mRNA splicing in budding yeast. Molecular Cell. ,vol. 32, pp. 727- 734 ,(2008) , 10.1016/J.MOLCEL.2008.11.013
Carine Barreau, Luc Paillard, Agnès Méreau, H. Beverley Osborne, Mammalian CELF/Bruno-like RNA-binding proteins: molecular characteristics and biological functions. Biochimie. ,vol. 88, pp. 515- 525 ,(2006) , 10.1016/J.BIOCHI.2005.10.011
Brenton R. Graveley, Alternative splicing: increasing diversity in the proteomic world. Trends in Genetics. ,vol. 17, pp. 100- 107 ,(2001) , 10.1016/S0168-9525(00)02176-4
Y. D. Choi, G. Dreyfuss, Isolation of the heterogeneous nuclear RNA-ribonucleoprotein complex (hnRNP): a unique supramolecular assembly. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 81, pp. 7471- 7475 ,(1984) , 10.1073/PNAS.81.23.7471
Mireya Plass, Eneritz Agirre, Diana Reyes, Francisco Camara, Eduardo Eyras, Co-evolution of the branch site and SR proteins in eukaryotes Trends in Genetics. ,vol. 24, pp. 590- 594 ,(2008) , 10.1016/J.TIG.2008.10.004