Population Genomics of American Mink Using Whole Genome Sequencing Data.
作者： Younes Miar , Mehdi Sargolzaei , Duy Ngoc Do , Karim Karimi
关键词:
摘要: Characterizing the genetic structure and population history can facilitate development of genomic breeding strategies for American mink. In this study, we used whole genome sequences 100 mink from Canadian Centre Fur Animal Research (CCFAR) at Dalhousie Faculty Agriculture (Truro, NS, Canada) Millbank Farm (Rockwood, ON, to investigate their structure, diversity linkage disequilibrium (LD) patterns. Analysis molecular variance (AMOVA) indicated that variation among color-types was significant (p 20 kb >100 in CCFAR suggesting density 120,000 24,000 single nucleotide polymorphisms (SNP) would provide adequate accuracy evaluation these populations, respectively. These results accounting admixture is critical designing SNP panels genotype-phenotype association studies
mdpi.com
scilit.net参考文章(78)
Peter Smouse, J. M. Quattro, L. Excoffier, Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics. ,vol. 131, pp. 479- 491 ,(1992) , 10.1093/GENETICS/131.2.479
M Slatkin, Linkage disequilibrium in growing and stable populations Genetics. ,vol. 137, pp. 331- 336 ,(1994) , 10.1093/GENETICS/137.1.331
T. H. E. Meuwissen, M. E. Goddard, B. J. Hayes, Prediction of Total Genetic Value Using Genome-Wide Dense Marker Maps Genetics. ,vol. 157, pp. 1819- 1829 ,(2001) , 10.1093/GENETICS/157.4.1819
Thibaut Jombart, Sébastien Devillard, François Balloux, Discriminant analysis of principal components: a new method for the analysis of genetically structured populations BMC Genetics. ,vol. 11, pp. 94- 94 ,(2010) , 10.1186/1471-2156-11-94
H. Nilsen, B. Hayes, P. R. Berg, A. Roseth, K. K. Sundsaasen, K. Nilsen, S. Lien, Construction of a dense SNP map for bovine chromosome 6 to assist the assembly of the bovine genome sequence. Animal Genetics. ,vol. 39, pp. 97- 104 ,(2008) , 10.1111/J.1365-2052.2007.01686.X
Kristin G. Ardlie, Leonid Kruglyak, Mark Seielstad, Patterns of linkage disequilibrium in the human genome Nature Reviews Genetics. ,vol. 3, pp. 299- 309 ,(2002) , 10.1038/NRG777
A. Toosi, R. L. Fernando, J. C. M. Dekkers, Genomic selection in admixed and crossbred populations. Journal of Animal Science. ,vol. 88, pp. 32- 46 ,(2010) , 10.2527/JAS.2009-1975
Silvia Teresa Rodríguez-Ramilo, Jesús Fernández, Miguel Angel Toro, Delfino Hernández, Beatriz Villanueva, Genome-wide estimates of coancestry, inbreeding and effective population size in the Spanish Holstein population. PLOS ONE. ,vol. 10, ,(2015) , 10.1371/JOURNAL.PONE.0124157
B. S. Weir, C. Clark Cockerham, ESTIMATING F
-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE Evolution. ,vol. 38, pp. 1358- 1370 ,(1984) , 10.1111/J.1558-5646.1984.TB05657.X
W. G. Hill, Alan Robertson, Linkage disequilibrium in finite populations Theoretical and Applied Genetics. ,vol. 38, pp. 226- 231 ,(1968) , 10.1007/BF01245622