Gene Expression Profile and Prognostic Value of m6A RNA Methylation Regulators in Hepatocellular Carcinoma.

作者: Xian Chang , Yang-Fan Lv , Qiao-Nan Guo , Jing He , Ya Cao

DOI: 10.2147/JHC.S296438

关键词:

摘要: Background N6-methyladenosine (m6A) RNA methylation is the most prevalent modification of mammalian RNA, and it associated with tumorigenesis cancer progression. Its regulation mediated via m6A-related regulators, including "erasers," "readers," "writers". The present study evaluated expression profile, risk signature prognostic value 13 m6A regulators in hepatocellular carcinoma (HCC) using different datasets, Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GEO) clinical samples. Methods We used 374 HCC samples derived from TCGA database, 569 2 GEO tumour nontumour tissues 60 patients who underwent surgery Xinqiao Hospital Chongqing to assess gene profiles values HCC. Results Eight core were overexpressed all databases, TCGA, GSE, Two clusters (Cluster 1 Cluster 2) identified consensus clustering. was poorer prognosis, higher grade, AFP levels, worse outcome compared 1, which indicates that these are highly correlated malignancy. performed survival analyses Log rank tests a Cox regression model. enrichment analysis detect related KEGG GO pathways. five selected regulators. Conclusion Our work suggested might be key participants progression potential biomarkers value.

参考文章(46)
Yang-Fan Lv, Guang-Ning Yan, Gang Meng, Xi Zhang, Qiao-Nan Guo, Enhancer of zeste homolog 2 silencing inhibits tumor growth and lung metastasis in osteosarcoma Scientific Reports. ,vol. 5, pp. 12999- 12999 ,(2015) , 10.1038/SREP12999
Jacques Ferlay, Isabelle Soerjomataram, Rajesh Dikshit, Sultan Eser, Colin Mathers, Marise Rebelo, Donald Maxwell Parkin, David Forman, Freddie Bray, Cancer incidence and mortality worldwide: sources, methods and major patterns in GLOBOCAN 2012. International Journal of Cancer. ,vol. 136, ,(2015) , 10.1002/IJC.29210
Xiao Wang, Boxuan Simen Zhao, Ian A Roundtree, Zhike Lu, Dali Han, Honghui Ma, Xiaocheng Weng, Kai Chen, Hailing Shi, Chuan He, None, N6-methyladenosine Modulates Messenger RNA Translation Efficiency Cell. ,vol. 161, pp. 1388- 1399 ,(2015) , 10.1016/J.CELL.2015.05.014
Tingting Zhu, Ian A Roundtree, Ping Wang, Xiao Wang, Li Wang, Chang Sun, Yuan Tian, Jie Li, Chuan He, Yanhui Xu, Crystal structure of the YTH domain of YTHDF2 reveals mechanism for recognition of N6-methyladenosine Cell Research. ,vol. 24, pp. 1493- 1496 ,(2014) , 10.1038/CR.2014.152
Yamei Niu, Xu Zhao, Yong-Sheng Wu, Ming-Ming Li, Xiu-Jie Wang, Yun-Gui Yang, N6-methyl-adenosine (m6A) in RNA: An Old Modification with A Novel Epigenetic Function Genomics, Proteomics & Bioinformatics. ,vol. 11, pp. 8- 17 ,(2013) , 10.1016/J.GPB.2012.12.002
Brian D. Strahl, C. David Allis, The language of covalent histone modifications. Nature. ,vol. 403, pp. 41- 45 ,(2000) , 10.1038/47412
Cha-Mer Wei, Alan Gershowitz, Bernard Moss, Methylated nucleotides block 5' terminus of HeLa cell messenger RNA. Cell. ,vol. 4, pp. 379- 386 ,(1975) , 10.1016/0092-8674(75)90158-0
Chuan He, Grand Challenge Commentary: RNA epigenetics? Nature Chemical Biology. ,vol. 6, pp. 863- 865 ,(2010) , 10.1038/NCHEMBIO.482
Jianzhao Liu, Yanan Yue, Dali Han, Xiao Wang, Ye Fu, Liang Zhang, Guifang Jia, Miao Yu, Zhike Lu, Xin Deng, Qing Dai, Weizhong Chen, Chuan He, A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation Nature Chemical Biology. ,vol. 10, pp. 93- 95 ,(2014) , 10.1038/NCHEMBIO.1432
Dan Dominissini, Sharon Moshitch-Moshkovitz, Schraga Schwartz, Mali Salmon-Divon, Lior Ungar, Sivan Osenberg, Karen Cesarkas, Jasmine Jacob-Hirsch, Ninette Amariglio, Martin Kupiec, Rotem Sorek, Gideon Rechavi, Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq Nature. ,vol. 485, pp. 201- 206 ,(2012) , 10.1038/NATURE11112