Statistical mechanics of interacting metabolic networks.

作者: Jorge Fernandez-de-Cossio-Diaz , Roberto Mulet

DOI: 10.1103/PHYSREVE.101.042401

关键词:

摘要: We cast the metabolism of interacting cells within a statistical mechanics framework considering both actual phenotypic capacities each cell and its interaction with neighbors. Reaction fluxes will be components high-dimensional spin vectors, whose values constrained by stochiometry energy requirements metabolism. Within this picture, finding states population turns out to equivalent searching for equilibrium disordered model. provide general solution problem arbitrary metabolic networks interactions. apply simplified model complex network, central core Escherichia coli, demonstrate that combination selective pressure interactions defines space. also present numerical results fixed in grid. These reproduce qualitative picture discussed mean-field Cells may specialize producing or consuming metabolites complementing other, is described an phase space multiple minima, like spin-glass

参考文章(57)
Edward T. Gawlinski, Robert A. Gatenby, A Reaction-Diffusion Model of Cancer Invasion Cancer Research. ,vol. 56, pp. 5745- 5753 ,(1996)
Amit Varma, Brian W. Boesch, Bernhard O. Palsson, Biochemical production capabilities ofescherichia coli Biotechnology and Bioengineering. ,vol. 42, pp. 59- 73 ,(1993) , 10.1002/BIT.260420109
M. E. Dyer, A. M. Frieze, On the complexity of computing the volume of a polyhedron SIAM Journal on Computing. ,vol. 17, pp. 967- 974 ,(1988) , 10.1137/0217060
GEORGE A. BROOKS, The lactate shuttle during exercise and recovery. Medicine and Science in Sports and Exercise. ,vol. 18, pp. 360- 368 ,(1986) , 10.1249/00005768-198606000-00019
D. S. Treves, S. Manning, J. Adams, Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli. Molecular Biology and Evolution. ,vol. 15, pp. 789- 797 ,(1998) , 10.1093/OXFORDJOURNALS.MOLBEV.A025984
Mireille Bélanger, Igor Allaman, Pierre J. Magistretti, Brain energy metabolism: focus on astrocyte-neuron metabolic cooperation Cell Metabolism. ,vol. 14, pp. 724- 738 ,(2011) , 10.1016/J.CMET.2011.08.016
Francesc Font-Clos, Francesco Alessandro Massucci, Isaac Pérez Castillo, A weighted belief-propagation algorithm to estimate volume-related properties of random polytopes arXiv: Disordered Systems and Neural Networks. ,(2012) , 10.1088/1742-5468/2012/11/P11003
Ana Traven, Amrei Jänicke, Paul Harrison, Angavai Swaminathan, Torsten Seemann, Traude H. Beilharz, Transcriptional Profiling of a Yeast Colony Provides New Insight into the Heterogeneity of Multicellular Fungal Communities PLOS ONE. ,vol. 7, pp. 1- 11 ,(2012) , 10.1371/JOURNAL.PONE.0046243
Adam M Feist, Bernhard O Palsson, The biomass objective function Current Opinion in Microbiology. ,vol. 13, pp. 344- 349 ,(2010) , 10.1016/J.MIB.2010.03.003
GEORGE A. BROOKS, Intra- and extra-cellular lactate shuttles. Medicine and Science in Sports and Exercise. ,vol. 32, pp. 790- 799 ,(2000) , 10.1097/00005768-200004000-00011