Comparative genome analysis of fish pathogen Flavobacterium columnare reveals extensive sequence diversity within the species

作者: Pattanapon Kayansamruaj , Ha Thanh Dong , Ikuo Hirono , Hidehiro Kondo , Saengchan Senapin

DOI: 10.1016/J.MEEGID.2017.06.012

关键词:

摘要: … fish species globally. To gain an insight into bacterial genomic contents and structures, comparative genome … were also included for comparative genomic analyses in the present study. …

参考文章(57)
Ha Thanh Dong, Vuong Viet Nguyen, Kornsunee Phiwsaiya, Warachin Gangnonngiw, Boonsirm Withyachumnarnkul, Channarong Rodkhum, Saengchan Senapin, Concurrent infections of Flavobacterium columnare and Edwardsiella ictaluri in striped catfish, Pangasianodon hypophthalmus in Thailand Aquaculture. ,vol. 448, pp. 142- 150 ,(2015) , 10.1016/J.AQUACULTURE.2015.05.046
Yuri I. Wolf, Eugene V. Koonin, Genome reduction as the dominant mode of evolution BioEssays. ,vol. 35, pp. 829- 837 ,(2013) , 10.1002/BIES.201300037
H T Dong, S Senapin, B LaFrentz, C Rodkhum, Virulence assay of rhizoid and non-rhizoid morphotypes of Flavobacterium columnare in red tilapia, Oreochromis sp., fry. Journal of Fish Diseases. ,vol. 39, pp. 649- 655 ,(2016) , 10.1111/JFD.12385
Mark J McBride, Daisuke Nakane, Flavobacterium gliding motility and the type IX secretion system. Current Opinion in Microbiology. ,vol. 28, pp. 72- 77 ,(2015) , 10.1016/J.MIB.2015.07.016
A.P. Underwood, A. Mulder, S. Gharbia, J. Green, Virulence Searcher: a tool for searching raw genome sequences from bacterial genomes for putative virulence factors Clinical Microbiology and Infection. ,vol. 11, pp. 770- 772 ,(2005) , 10.1111/J.1469-0691.2005.01210.X
Rotem Sorek, Victor Kunin, Philip Hugenholtz, CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaea Nature Reviews Microbiology. ,vol. 6, pp. 181- 186 ,(2008) , 10.1038/NRMICRO1793
Bhavjinder K Dhillon, Matthew R Laird, Julie A Shay, Geoffrey L Winsor, Raymond Lo, Fazmin Nizam, Sheldon K Pereira, Nicholas Waglechner, Andrew G McArthur, Morgan GI Langille, Fiona SL Brinkman, None, IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis Nucleic Acids Research. ,vol. 43, ,(2015) , 10.1093/NAR/GKV401
Oscar Olivares-Fuster, Craig A. Shoemaker, Phillip H. Klesius, Covadonga R. Arias, Molecular typing of isolates of the fish pathogen, Flavobacterium columnare, by single-strand conformation polymorphism analysis Fems Microbiology Letters. ,vol. 269, pp. 63- 69 ,(2007) , 10.1111/J.1574-6968.2006.00605.X
Karl Heinz Schleifer, Classification of Bacteria and Archaea: past, present and future. Systematic and Applied Microbiology. ,vol. 32, pp. 533- 542 ,(2009) , 10.1016/J.SYAPM.2009.09.002
Jan P. Meier-Kolthoff, Hans-Peter Klenk, Markus Göker, Taxonomic use of DNA G+C content and DNA–DNA hybridization in the genomic age International Journal of Systematic and Evolutionary Microbiology. ,vol. 64, pp. 352- 356 ,(2014) , 10.1099/IJS.0.056994-0