Evolution of the Dog Genome

作者: Matthew T Webster , Elinor K Karlsson

DOI: 10.1002/9780470015902.A0021780

关键词:

摘要: The dog genome illuminates several important features of mammalian evolution. is a distant relative to the primate and rodent clades, so its sequence can be used identify genetic changes that occurred on these lineages as an aid in annotating human genome. also has complex population history, shaped by ancient domestication events and, recently, strong artificial selection form distinct breeds. enabled studies shed light canid phylogeny, revealing this history created genomic haplotype structure highly amenable association mapping. Dogs exhibit enormous phenotypic variation suffer from many same disorders humans, making them powerful model organism for identifying variants responsible common traits diseases including cancer, diabetes, autoimmune epilepsy. Key concepts: The distantly related clades. Dog evolution was characterized with large number chromosomal fissions low activity transposons. Genetic evidence supports origin dogs East Asia. Dog involved two bottlenecks, one during domestication, over 15 000 years ago, formation modern breeds past few hundred years. Modern remarkable diversity increased rates shared epilepsy. Patterns are trait mapping studies. Keywords: molecular evolution; population genetics; association studies; domestication; dog breeds; artificial

参考文章(30)
Jeffrey A Bailey, Robert Baertsch, W Kent, David Haussler, Evan E Eichler, Hotspots of mammalian chromosomal evolution. Genome Biology. ,vol. 5, pp. 1- 7 ,(2004) , 10.1186/GB-2004-5-4-R23
Robert K. Wayne, Eli Geffen, Derek J. Girman, Klaus P. Koepfli, Lisa M. Lau, Charles R. Marshall, Molecular Systematics of the Canidae Systematic Biology. ,vol. 46, pp. 622- 653 ,(1997) , 10.1093/SYSBIO/46.4.622
Ling Lin, Juliette Faraco, Robin Li, Hiroshi Kadotani, William Rogers, Xiaoyan Lin, Xiaohong Qiu, Pieter J de Jong, Seiji Nishino, Emmanuel Mignot, The Sleep Disorder Canine Narcolepsy Is Caused by a Mutation in the Hypocretin (Orexin) Receptor 2 Gene Cell. ,vol. 98, pp. 365- 376 ,(1999) , 10.1016/S0092-8674(00)81965-0
D. Schwartz-Porsche, D. Schmidt, W. Löscher, H.-H. Frey, Evaluation of epileptic dogs as an animal model of human epilepsy. Drug Research. ,vol. 35, pp. 82- 87 ,(1985)
Leena Peltonen, Aarno Palotie, Kenneth Lange, Use of population isolates for mapping complex traits Nature Reviews Genetics. ,vol. 1, pp. 182- 190 ,(2000) , 10.1038/35042049
K LARK, K CHASE, N SUTTER, Genetic architecture of the dog: sexual size dimorphism and functional morphology Trends in Genetics. ,vol. 22, pp. 537- 544 ,(2006) , 10.1016/J.TIG.2006.08.009
Carles Vilà, Peter Savolainen, Jesús E Maldonado, Isabel R Amorim, John E Rice, Rodney L Honeycutt, Keith A Crandall, Joakim Lundeberg, Robert K Wayne, Multiple and Ancient Origins of the Domestic Dog Science. ,vol. 276, pp. 1687- 1689 ,(1997) , 10.1126/SCIENCE.276.5319.1687
Karen L. Overall, Natural animal models of human psychiatric conditions: assessment of mechanism and validity. Progress in Neuro-psychopharmacology & Biological Psychiatry. ,vol. 24, pp. 727- 776 ,(2000) , 10.1016/S0278-5846(00)00104-4
Adam R. Boyko, Scott H. Williamson, Amit R. Indap, Jeremiah D. Degenhardt, Ryan D. Hernandez, Kirk E. Lohmueller, Mark D. Adams, Steffen Schmidt, John J. Sninsky, Shamil R. Sunyaev, Thomas J. White, Rasmus Nielsen, Andrew G. Clark, Carlos D. Bustamante, Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome PLoS Genetics. ,vol. 4, pp. e1000083- ,(2008) , 10.1371/JOURNAL.PGEN.1000083
Chand Khanna, Kerstin Lindblad-Toh, David Vail, Cheryl London, Philip Bergman, Lisa Barber, Matthew Breen, Barbara Kitchell, Elizabeth McNeil, Jaime F Modiano, Steven Niemi, Kenine E Comstock, Elaine Ostrander, Susan Westmoreland, Stephen Withrow, The dog as a cancer model. Nature Biotechnology. ,vol. 24, pp. 1065- 1066 ,(2006) , 10.1038/NBT0906-1065B