Affinity capillary electrophoresis of DNA for detection of single-nucleotide polymorphisms and point mutations Comprehensive study for optimization of the weak affinity

作者: Kae Sato , Miwa Onoguchi , Kazuo Hosokawa , Mizuo Maeda

DOI: 10.1016/J.CHROMA.2005.10.020

关键词:

摘要: Abstract A single-stranded DNA and its point mutant can be separated with affinity capillary electrophoresis (ACE) in which an appropriate ligand is used as a pseudo-stationary phase. In this paper, we systematically examine the effects of sequence, temperature, cation concentration on ACE separation quality, quantitatively evaluated terms resolution peak height. For fine tuning affinity, control MgCl2 insertion spacer sequence into are more effective than temperature. design DNA, simple strategy proposed, based prediction melting This was tested eleven different sample sequences. All them were under same conditions (250 μM 25 °C), nine cases had satisfactory qualities.

参考文章(17)
Toshiyuki Ito, Akira Inoue, Kae Sato, Kazuo Hosokawa, Mizuo Maeda, Affinity Capillary Electrophoresis in a Poly(dimethylsiloxane)-glass Hybrid Microchip Chemistry Letters. ,vol. 32, pp. 688- 689 ,(2003) , 10.1246/CL.2003.688
Yoshiki Katayama, Takumi Arisawa, Yoshihisa Ozaki, Mizuo Maeda, An Affinity Capillary Electrophoresis for the Separation of Sequence Isomers of Oligonucleotide Chemistry Letters. ,vol. 29, pp. 106- 107 ,(2000) , 10.1246/CL.2000.106
F. Broly, D. Marez, J.-M. Lo Guidice, N. Sabbagh, M. Legrand, P. Boone, U. A. Meyer, A nonsense mutation in the cytochrome P450 CYP2D6 gene identified in a Caucasian with an enzyme deficiency Human Genetics. ,vol. 96, pp. 601- 603 ,(1995) , 10.1007/BF00197419
Kae Sato, Akira Inoue, Kazuo Hosokawa, Mizuo Maeda, Detection of single‐base mutation by affinity capillary electrophoresis using a DNA‐polyacrylamide conjugate Electrophoresis. ,vol. 26, pp. 3076- 3080 ,(2005) , 10.1002/ELPS.200410379
M. Shchepinov, Steric Factors Influencing Hybridisation Of Nucleic Acids To Oligonucleotide Arrays Nucleic Acids Research. ,vol. 25, pp. 1155- 1161 ,(1997) , 10.1093/NAR/25.6.1155
David Malkin, Kent W. Jolly, Noële Barbier, A. Thomas Look, Stephen H. Friend, Mark C. Gebhardt, Tone I. Andersen, Anne-Lise Børresen, Frederick P. Li, Judy Garber, Louise C. Strong, Germline mutations of the p53 tumor-suppressor gene in children and young adults with second malignant neoplasms. The New England Journal of Medicine. ,vol. 326, pp. 1309- 1315 ,(1992) , 10.1056/NEJM199205143262002
Joseph G. Hacia, Resequencing and mutational analysis using oligonucleotide microarrays Nature Genetics. ,vol. 21, pp. 42- 47 ,(1999) , 10.1038/4469
Steven J. Laken, Gloria M. Petersen, Stephen B. Gruber, Carole Oddoux, Harry Ostrer, Francis M. Giardiello, Stanley R. Hamilton, Heather Hampel, Arnold Markowitz, David Klimstra, Suresh Jhanwar, Sidney Winawer, Kenneth Offit, Michael C. Luce, Kenneth W. Kinzler, Bert Vogelstein, Familial colorectal cancer in Ashkenazim due to a hypermutable tract in APC Nature Genetics. ,vol. 17, pp. 79- 83 ,(1997) , 10.1038/NG0997-79