Taxonomic affiliation of new genomes should be verified using average nucleotide identity and multilocus phylogenetic analysis.
作者： M. J. Figueras , R. Beaz-Hidalgo , M. J. Hossain , M. R. Liles
关键词:
摘要: ABSTRACT The average nucleotide identity (ANI) determines if two genomes belong to the same species. Using ANI, we detected mislabeled and recommend verifying with ANI multilocus phylogenetic analysis species affiliations of announced genomes. slightly different results obtained calculation software can potentially mislead taxonomic inferences.
sci-hub.se 参考文章(7)
Roxana Beaz-Hidalgo, Mohammad J. Hossain, Mark R. Liles, Maria-Jose Figueras, Strategies to Avoid Wrongly Labelled Genomes Using as Example the Detected Wrong Taxonomic Affiliation for Aeromonas Genomes in the GenBank Database PLOS ONE. ,vol. 10, pp. e0115813- ,(2015) , 10.1371/JOURNAL.PONE.0115813
E. I. Shagimardanova, A. A. Toymentseva, N. P. Balaban, A. M. Mardanova, Y. V. Danilova, O. A. Gusev, E. Kostryukova, I. Karpova, A. Manolov, D. Alexeev, M. R. Sharipova, Draft Genome Sequence of Bacillus pumilus 7P, Isolated from the Soil of the Tatarstan Republic, Russia Genome Announcements. ,vol. 2, ,(2014) , 10.1128/GENOMEA.00599-14
Michael Richter, Ramon Rosselló-Móra, Shifting the Genomic Gold Standard for the Prokaryotic Species Definition Proceedings of the National Academy of Sciences of the United States of America. ,vol. 106, pp. 19126- 19131 ,(2009) , 10.1073/PNAS.0906412106
Johan Goris, Konstantinos T. Konstantinidis, Joel A. Klappenbach, Tom Coenye, Peter Vandamme, James M. Tiedje, DNA–DNA hybridization values and their relationship to whole-genome sequence similarities International Journal of Systematic and Evolutionary Microbiology. ,vol. 57, pp. 81- 91 ,(2007) , 10.1099/IJS.0.64483-0
R. Kaden, J. Agren, S. Ferrari, M. Lindberg, S. Backman, T. Wahab, Whole-Genome Sequence of Brucella canis Strain SVA13, Isolated from an Infected Dog Genome Announcements. ,vol. 2, ,(2014) , 10.1128/GENOMEA.00700-14
L. E. Servin-Garciduenas, A. Sanchez-Quinto, E. Martinez-Romero, Draft Genome Sequence of Commensalibacter papalotli MX01, a Symbiont Identified from the Guts of Overwintering Monarch Butterflies. Genome Announcements. ,vol. 2, ,(2014) , 10.1128/GENOMEA.00128-14
H. Komaki, N. Ichikawa, A. Hosoyama, N. Fujita, Y. Igarashi, Draft Genome Sequence of Marine-Derived Actinomycete Nocardiopsis sp. Strain TP-A0876, a Producer of Polyketide Pyrones Genome Announcements. ,vol. 2, ,(2014) , 10.1128/GENOMEA.00665-14