Event Detection by Feature Unpredictability in Phase-Contrast Videos of Cell Cultures

作者: Melih Kandemir , Jose C. Rubio , Ute Schmidt , Christian Wojek , Johannes Welbl

DOI: 10.1007/978-3-319-10470-6_20

关键词:

摘要: In this work we propose a novel framework for generic event monitoring in live cell culture videos, built on the assumption that unpredictable observations should correspond to biological events. We use small set of event-free data train multioutput multikernel Gaussian process model operates as an predictor by performing autoregression bank heterogeneous features extracted from consecutive frames video sequence. show prediction error can be used probability measure presence relevant events, enable users perform further analysis or large-scale non-annotated data. validate our approach two phase-contrast sequence sets containing mitosis and apoptosis events: new private dataset human bone cancer (osteosarcoma) cells benchmark stem cells.

参考文章(15)
Yang Song, Weidong Cai, Seungil Huh, Mei Chen, Takeo Kanade, Yun Zhou, Dagan Feng, Discriminative data transform for image feature extraction and classification. medical image computing and computer-assisted intervention. ,vol. 16, pp. 452- 459 ,(2013) , 10.1007/978-3-642-40763-5_56
Robert Grimm, Sebastian Fürst, Isabel Dregely, Christoph Forman, Jana Maria Hutter, Sibylle I. Ziegler, Stephan Nekolla, Berthold Kiefer, Markus Schwaiger, Joachim Hornegger, Tobias Block, Self-gated radial MRI for respiratory motion compensation on hybrid PET/MR systems. medical image computing and computer-assisted intervention. ,vol. 16, pp. 17- 24 ,(2013) , 10.1007/978-3-642-40760-4_3
Fuxing Yang, Michael A. Mackey, Fiorenza Ianzini, Greg Gallardo, Milan Sonka, Cell segmentation, tracking, and mitosis detection using temporal context medical image computing and computer assisted intervention. ,vol. 8, pp. 302- 309 ,(2005) , 10.1007/11566465_38
A.J. HAND, T. SUN, D.C. BARBER, D.R. HOSE, S. MACNEIL, Automated tracking of migrating cells in phase-contrast video microscopy sequences using image registration. Journal of Microscopy. ,vol. 234, pp. 62- 79 ,(2009) , 10.1111/J.1365-2818.2009.03144.X
Seungil Huh, Sungeun Eom, Ryoma Bise, Zhaozheng Yin, Takeo Kanade, Mitosis detection for stem cell tracking in phase-contrast microscopy images 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. pp. 2121- 2127 ,(2011) , 10.1109/ISBI.2011.5872832
Junshui Ma, Simon Perkins, Online novelty detection on temporal sequences knowledge discovery and data mining. pp. 613- 618 ,(2003) , 10.1145/956750.956828
Borislav Antic, Bjorn Ommer, Video parsing for abnormality detection international conference on computer vision. pp. 2415- 2422 ,(2011) , 10.1109/ICCV.2011.6126525
M. Hoai, F. De la Torre, Max-margin early event detectors computer vision and pattern recognition. pp. 2863- 2870 ,(2012) , 10.1109/CVPR.2012.6248012
Seungil Huh, Dai Fei Elmer Ker, R Bise, Mei Chen, Takeo Kanade, Automated Mitosis Detection of Stem Cell Populations in Phase-Contrast Microscopy Images IEEE Transactions on Medical Imaging. ,vol. 30, pp. 586- 596 ,(2011) , 10.1109/TMI.2010.2089384