Design and Implementation of the HPCS Graph Analysis Benchmark on Symmetric Multiprocessors

作者: David A Bader , Kamesh Madduri , None

DOI: 10.1007/11602569_48

关键词:

摘要: Graph theoretic problems are representative of fundamental computations in traditional and emerging scientific disciplines like computing computational biology, as well applications national security. We present our design implementation a graph theory application that supports the kernels from Scalable Synthetic Compact Applications (SSCA) benchmark suite, developed under DARPA High Productivity Computing Systems (HPCS) program. This synthetic consists four require irregular access to large, directed, weighted multi-graph. have parallel this C using POSIX thread library for commodity symmetric multiprocessors (SMPs). In paper, we primarily discuss data layout choices algorithmic issues each kernel, also execution time validation results.

参考文章(42)
J. J. Dongarra, C. B. Moler, G. W. Stewart, J. R. Bunch, LINPACK Users' Guide ,(1987)
Michael A. Trick, David J. Johnson, Cliques, Coloring, and Satisfiability: Second DIMACS Implementation Challenge, Workshop, October 11-13, 1993 American Mathematical Society. ,(1996)
H C Lee, T F Walseth, G T Bratt, R N Hayes, D L Clapper, Structural determination of a cyclic metabolite of NAD+ with intracellular Ca2+-mobilizing activity. Journal of Biological Chemistry. ,vol. 264, pp. 1608- 1615 ,(1989) , 10.1016/S0021-9258(18)94230-4
Geoffrey C. Fox, David P. Koester, Parallel block-diagonal-bordered sparse linear solvers for power systems applications Syracuse University. ,(1995)
Jose Manuel Cancela, Grant C. Churchill, Antony Galione, Coordination of agonist-induced Ca2+-signalling patterns by NAADP in pancreatic acinar cells. Nature. ,vol. 398, pp. 74- 76 ,(1999) , 10.1038/18032
JB Michael, DB Martin, L Peter, Calcium - a life and death signal Nature. ,vol. 395, pp. 645- 648 ,(1998) , 10.1038/27094
D.A. Bader, Guojing Cong, A fast, parallel spanning tree algorithm for symmetric multiprocessors international parallel and distributed processing symposium. ,vol. 2, pp. 38- 47 ,(2004) , 10.1109/IPDPS.2004.1302951
David R. Helman, Joseph JáJá, Designing Practical Efficient Algorithms for Symmetric Multiprocessors algorithm engineering and experimentation. pp. 37- 56 ,(1999) , 10.1007/3-540-48518-X_3
Joel A. Swanson, Kenneth A. Christensen, Jesse T. Myers, pH-dependent regulation of lysosomal calcium in macrophages. Journal of Cell Science. ,vol. 115, pp. 599- 607 ,(2002) , 10.1242/JCS.115.3.599
David R. Helman, Joseph JáJá, Prefix Computations on Symmetric Multiprocessors Journal of Parallel and Distributed Computing. ,vol. 61, pp. 265- 278 ,(2001) , 10.1006/JPDC.2000.1678