Developing in 3D: the role of CTCF in cell differentiation

作者: Rodrigo G. Arzate-Mejía , Félix Recillas-Targa , Victor G. Corces

DOI: 10.1242/DEV.137729

关键词:

摘要: … We then discuss the roles of CTCF in the development and differentiation of various cell and tissue types, ranging from embryonic stem cells (ESCs) to neural, cardiac and muscle cells. …

参考文章(163)
Klenova Em, Goodwin Gh, Adler Vv, Lobanenkov Vv, Nicolas Rh, Polotskaja Av, Paterson H, A novel sequence-specific DNA binding protein which interacts with three regularly spaced direct repeats of the CCCTC-motif in the 5'-flanking sequence of the chicken c-myc gene. Oncogene. ,vol. 5, pp. 1743- 1753 ,(1990)
Amy T. Hark, Christopher J. Schoenherr, David J. Katz, Robert S. Ingram, John M. Levorse, Shirley M. Tilghman, CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus Nature. ,vol. 405, pp. 486- 489 ,(2000) , 10.1038/35013106
Tiaojiang Xiao, Patompon Wongtrakoongate, Cecelia Trainor, Gary Felsenfeld, CTCF Recruits Centromeric Protein CENP-E to the Pericentromeric/Centromeric Regions of Chromosomes through Unusual CTCF-Binding Sites. Cell Reports. ,vol. 12, pp. 1704- 1714 ,(2015) , 10.1016/J.CELREP.2015.08.005
Tsung-Han S. Hsieh, Assaf Weiner, Bryan Lajoie, Job Dekker, Nir Friedman, Oliver J. Rando, Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C Cell. ,vol. 162, pp. 108- 119 ,(2015) , 10.1016/J.CELL.2015.05.048
Adam C. Bell, Gary Felsenfeld, Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene Nature. ,vol. 405, pp. 482- 485 ,(2000) , 10.1038/35013100
Matthew T. Maurano, Hao Wang, Sam John, Anthony Shafer, Theresa Canfield, Kristen Lee, John A. Stamatoyannopoulos, Role of DNA Methylation in Modulating Transcription Factor Occupancy Cell Reports. ,vol. 12, pp. 1184- 1195 ,(2015) , 10.1016/J.CELREP.2015.07.024
Adrian L Sanborn, Suhas SP Rao, Su-Chen Huang, Neva C Durand, Miriam H Huntley, Andrew I Jewett, Ivan D Bochkov, Dharmaraj Chinnappan, Ashok Cutkosky, Jian Li, Kristopher P Geeting, Andreas Gnirke, Alexandre Melnikov, Doug McKenna, Elena K Stamenova, Eric S Lander, Erez Lieberman Aiden, None, Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 112, pp. 201518552- ,(2015) , 10.1073/PNAS.1518552112
Darío G. Lupiáñez, Katerina Kraft, Verena Heinrich, Peter Krawitz, Francesco Brancati, Eva Klopocki, Denise Horn, Hülya Kayserili, John M. Opitz, Renata Laxova, Fernando Santos-Simarro, Brigitte Gilbert-Dussardier, Lars Wittler, Marina Borschiwer, Stefan A. Haas, Marco Osterwalder, Martin Franke, Bernd Timmermann, Jochen Hecht, Malte Spielmann, Axel Visel, Stefan Mundlos, Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions Cell. ,vol. 161, pp. 1012- 1025 ,(2015) , 10.1016/J.CELL.2015.04.004
Elzo de Wit, Erica SM Vos, Sjoerd JB Holwerda, Christian Valdes-Quezada, Marjon JAM Verstegen, Hans Teunissen, Erik Splinter, Patrick J Wijchers, Peter HL Krijger, Wouter de Laat, None, CTCF Binding Polarity Determines Chromatin Looping Molecular Cell. ,vol. 60, pp. 676- 684 ,(2015) , 10.1016/J.MOLCEL.2015.09.023
Michael H. Nichols, Victor G. Corces, A CTCF Code for 3D Genome Architecture Cell. ,vol. 162, pp. 703- 705 ,(2015) , 10.1016/J.CELL.2015.07.053