Profiling the immunome of little brown myotis provides a yardstick for measuring the genetic response to white-nose syndrome.

作者: Michael E. Donaldson , Christina M. Davy , Craig K. R. Willis , Scott McBurney , Allysia Park

DOI: 10.1111/EVA.12514

关键词:

摘要: White-nose syndrome (WNS) has devastated populations of hibernating bats in eastern North America, leading to emergency conservation listings for several species including the previously ubiquitous little brown myotis (Myotis lucifugus). However, some bat near epicenter WNS panzootic appear be stabilizing after initial precipitous declines, which could reflect a selective immunogenetic sweep. To investigate hypothesis that exerts significant selection on immunome affected populations, we developed novel, high-throughput sequence capture assay targeting 138 adaptive, intrinsic, and innate immunity genes putative adaptive significance, as well their respective regulatory regions (~370 kbp genomic sequence/individual). We used explore baseline variation M. lucifugus whether particular immune genes/variants are associated with susceptibility. also our detect 1,038 putatively neutral single nucleotide polymorphisms characterize contemporary population structure, providing context identification local adaptation. Sequence provided cost-effective, "all-in-one" test genetic structure revealed fine-scale, differentiation between sampling sites <600 km apart. identified functional variants This study lays foundations future investigations rangewide adaptation provides blueprint studies evolutionary rescue other host-pathogen systems.

参考文章(79)
Geraldine A. Auwera, Mauricio O. Carneiro, Christopher Hartl, Ryan Poplin, Guillermo del Angel, Ami Levy‐Moonshine, Tadeusz Jordan, Khalid Shakir, David Roazen, Joel Thibault, Eric Banks, Kiran V. Garimella, David Altshuler, Stacey Gabriel, Mark A. DePristo, From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline Current protocols in human genetics. ,vol. 43, ,(2013) , 10.1002/0471250953.BI1110S43
Katrina M. Morris, Belinda Wright, Catherine E. Grueber, Carolyn Hogg, Katherine Belov, Lack of genetic diversity across diverse immune genes in an endangered mammal, the Tasmanian devil (Sarcophilus harrisii) Molecular Ecology. ,vol. 24, pp. 3860- 3872 ,(2015) , 10.1111/MEC.13291
Eric Samorodnitsky, Benjamin M. Jewell, Raffi Hagopian, Jharna Miya, Michele R. Wing, Ezra Lyon, Senthilkumar Damodaran, Darshna Bhatt, Julie W. Reeser, Jharna Datta, Sameek Roychowdhury, Evaluation of Hybridization Capture Versus Amplicon-Based Methods for Whole-Exome Sequencing. Human Mutation. ,vol. 36, pp. 903- 914 ,(2015) , 10.1002/HUMU.22825
Andrea L. Smith, Nina Hewitt, Nicole Klenk, Dawn R. Bazely, Norman Yan, Stepan Wood, Irene Henriques, James I. MacLellan, Carla Lipsig-Mummé, Effects of climate change on the distribution of invasive alien species in Canada: a knowledge synthesis of range change projections in a warming world. Environmental Reviews. ,vol. 20, pp. 1- 16 ,(2012) , 10.1139/A11-020
Julian C. Knight, Genomic modulators of the immune response. Trends in Genetics. ,vol. 29, pp. 74- 83 ,(2013) , 10.1016/J.TIG.2012.10.006
Christopher J. Kyle, Yessica Rico, Sarrah Castillo, Vythegi Srithayakumar, Catherine I. Cullingham, Bradley N. White, Bruce A. Pond, Spatial patterns of neutral and functional genetic variations reveal patterns of local adaptation in raccoon (Procyon lotor) populations exposed to raccoon rabies. Molecular Ecology. ,vol. 23, pp. 2287- 2298 ,(2014) , 10.1111/MEC.12726
Sara J. Oyler-McCance, Jennifer A. Fike, Characterization of small microsatellite loci isolated in endangered Indiana bat ( Myotis sodalis ) for use in non-invasive sampling Conservation Genetics Resources. ,vol. 3, pp. 243- 245 ,(2011) , 10.1007/S12686-010-9332-0
Peter Tiffin, Jeffrey Ross-Ibarra, Advances and limits of using population genetics to understand local adaptation. Trends in Ecology and Evolution. ,vol. 29, pp. 673- 680 ,(2014) , 10.1016/J.TREE.2014.10.004
Christopher A. Dobony, Alan C. Hicks, Kate E. Langwig, Ryan I. von Linden, Joseph C. Okoniewski, Raymond E. Rainbolt, Little Brown Myotis Persist Despite Exposure to White-Nose Syndrome Journal of Fish and Wildlife Management. ,vol. 2, pp. 190- 195 ,(2011) , 10.3996/022011-JFWM-014
Dent A. Earl, Bridgett M. vonHoldt, STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method Conservation Genetics Resources. ,vol. 4, pp. 359- 361 ,(2012) , 10.1007/S12686-011-9548-7