The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense , shows a robust core and extensive exchange of genes from a shared gene pool
作者： Jorn R. de Haan , Balázs Brankovics , Theo A. J. van der Lee , Lidija Berke , Robert A. M. Vreeburg
DOI: 10.1186/S12864-021-07583-5
关键词:
摘要: … brasiliense isolates on different potato varieties and we identified genes that are associated to the virulent phenotype. Our pangenome study underlines the benefits of such an …
biomedcentral.com
sci-hub.st 参考文章(84)
Amy O. Charkowski, Jenna Lind, Isael Rubio-Salazar, Genomics of Plant-Associated Bacteria: The Soft Rot Enterobacteriaceae Genomics of Plant-Associated Bacteria. pp. 37- 58 ,(2014) , 10.1007/978-3-642-55378-3_2
Timo Beller, Enno Ohlebusch, Efficient Construction of a Compressed de Bruijn Graph for Pan-Genome Analysis combinatorial pattern matching. pp. 40- 51 ,(2015) , 10.1007/978-3-319-19929-0_4
R. Czajkowski, M.C.M. Pérombelon, S. Jafra, E. Lojkowska, M. Potrykus, J.M. van der Wolf, W. Sledz, Detection, identification and differentiation of Pectobacterium and Dickeya species causing potato blackleg and tuber soft rot: a review Annals of Applied Biology. ,vol. 166, pp. 18- 38 ,(2015) , 10.1111/AAB.12166
Uwe Baier, Timo Beller, Enno Ohlebusch, Graphical pan-genome analysis with compressed suffix trees and the Burrows–Wheeler transform Bioinformatics. ,vol. 32, pp. 497- 504 ,(2016) , 10.1093/BIOINFORMATICS/BTV603
Preetinanda Panda, Mark W. E. J. Fiers, Ashley Lu, Karen F. Armstrong, Andrew R. Pitman, Draft Genome Sequences of Three Pectobacterium Strains Causing Blackleg of Potato: P. carotovorum subsp. brasiliensis ICMP 19477, P. atrosepticum ICMP 1526, and P. carotovorum subsp. carotovorum UGC32 Genome Announcements. ,vol. 3, ,(2015) , 10.1128/GENOMEA.00874-15
V. Hélias, P. Hamon, E. Huchet, J. V. D. Wolf, D. Andrivon, Two new effective semiselective crystal violet pectate media for isolation of Pectobacterium and Dickeya Plant Pathology. ,vol. 61, pp. 339- 345 ,(2012) , 10.1111/J.1365-3059.2011.02508.X
John Mansfield, Stephane Genin, Shimpei Magori, Vitaly Citovsky, Malinee Sriariyanum, Pamela Ronald, MAX Dow, Valérie Verdier, Steven V Beer, Marcos A Machado, IAN Toth, George Salmond, Gary D Foster, None, Top 10 plant pathogenic bacteria in molecular plant pathology Molecular Plant Pathology. ,vol. 13, pp. 614- 629 ,(2012) , 10.1111/J.1364-3703.2012.00804.X
Natalya Yutin, Michael Y. Galperin, A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia. Environmental Microbiology. ,vol. 15, pp. 2631- 2641 ,(2013) , 10.1111/1462-2920.12173
Glorimar Marrero, Kevin L. Schneider, Daniel M. Jenkins, Anne M. Alvarez, Phylogeny and classification of
Dickeya
based on multilocus sequence analysis International Journal of Systematic and Evolutionary Microbiology. ,vol. 63, pp. 3524- 3539 ,(2013) , 10.1099/IJS.0.046490-0
Alison K. Hottes, Peter L. Freddolino, Anupama Khare, Zachary N. Donnell, Julia C. Liu, Saeed Tavazoie, Bacterial Adaptation through Loss of Function PLoS Genetics. ,vol. 9, pp. e1003617- 13 ,(2013) , 10.1371/JOURNAL.PGEN.1003617