Bioinformatics Meets Biomedicine: OncoFinder, a Quantitative Approach for Interrogating Molecular Pathways Using Gene Expression Data

作者: Anton A. Buzdin , Vladimir Prassolov , Alex A. Zhavoronkov , Nikolay M. Borisov

DOI: 10.1007/978-1-4939-7027-8_4

关键词:

摘要: … knowledge bases on miRs and their experimentally validated targets: miRTarBase [44] and … biomarkers of BC. For 21 of them, we found literature data connecting miR expression and …

参考文章(71)
L Svensson, B B Finlay, D Bass, C H von Bonsdorff, H B Greenberg, Symmetric infection of rotavirus on polarized human intestinal epithelial (Caco-2) cells. Journal of Virology. ,vol. 65, pp. 4190- 4197 ,(1991) , 10.1128/JVI.65.8.4190-4197.1991
Alexander M. Aliper, Victoria P. Frieden-Korovkina, Anton Buzdin, Sergey A. Roumiantsev, Alex Zhavoronkov, Interactome analysis of myeloid-derived suppressor cells in murine models of colon and breast cancer. Oncotarget. ,vol. 5, pp. 11345- 11353 ,(2014) , 10.18632/ONCOTARGET.2489
Agnieszka Morgenroth, Andreas T. J. Vogg, Katja Ermert, Boris Zlatopolskiy, Felix M. Mottaghy, Hedgehog signaling sensitizes glioma stem cells to endogenous nano-irradiation Oncotarget. ,vol. 5, pp. 5483- 5493 ,(2014) , 10.18632/ONCOTARGET.2123
Larisa Venkova, Alexander Aliper, Maria Suntsova, Roman Kholodenko, Denis Shepelin, Nicolas Borisov, Galina Malakhova, Raif Vasilov, Sergey Roumiantsev, Alex Zhavoronkov, Anton Buzdin, Combinatorial high-throughput experimental and bioinformatic approach identifies molecular pathways linked with the sensitivity to anticancer target drugs Oncotarget. ,vol. 6, pp. 27227- 27238 ,(2015) , 10.18632/ONCOTARGET.4507
Nikolay M. Borisov, Nadezhda V. Terekhanova, Alexander M. Aliper, Larisa S. Venkova, Philip Yu Smirnov, Sergey Roumiantsev, Mikhail B. Korzinkin, Alex A. Zhavoronkov, Anton A. Buzdin, Signaling pathways activation profiles make better markers of cancer than expression of individual genes Oncotarget. ,vol. 5, pp. 10198- 10205 ,(2014) , 10.18632/ONCOTARGET.2548
Ran Elkon, Rita Vesterman, Nira Amit, Igor Ulitsky, Idan Zohar, Mali Weisz, Gilad Mass, Nir Orlev, Giora Sternberg, Ran Blekhman, Jackie Assa, Yosef Shiloh, Ron Shamir, SPIKE – a database, visualization and analysis tool of cellular signaling pathways BMC Bioinformatics. ,vol. 9, pp. 110- 110 ,(2008) , 10.1186/1471-2105-9-110
P V Spirin, T D Lebedev, N N Orlova, A S Gornostaeva, M M Prokofjeva, N A Nikitenko, S E Dmitriev, A A Buzdin, N M Borisov, A M Aliper, A V Garazha, P M Rubtsov, C Stocking, V S Prassolov, Silencing AML1-ETO gene expression leads to simultaneous activation of both pro-apoptotic and proliferation signaling Leukemia. ,vol. 28, pp. 2222- 2228 ,(2014) , 10.1038/LEU.2014.130
Antonio Fabregat, Konstantinos Sidiropoulos, Phani Garapati, Marc Gillespie, Kerstin Hausmann, Robin Haw, Bijay Jassal, Steven Jupe, Florian Korninger, Sheldon McKay, Lisa Matthews, Bruce May, Marija Milacic, Karen Rothfels, Veronica Shamovsky, Marissa Webber, Joel Weiser, Mark Williams, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D'Eustachio, The Reactome Pathway Knowledgebase. Nucleic Acids Research. ,vol. 44, pp. 472- 477 ,(2014) , 10.1093/NAR/GKV1351
Shlomit Halachmi, Barbara A. Gilchrest, Update on genetic events in the pathogenesis of melanoma Current Opinion in Oncology. ,vol. 13, pp. 129- 136 ,(2001) , 10.1097/00001622-200103000-00008