Synthetic circuit for exact adaptation and fold-change detection

作者: Jongmin Kim , Ishan Khetarpal , Shaunak Sen , Richard M. Murray

DOI: 10.1093/NAR/GKU233

关键词:

摘要: Biological organisms use their sensory systems to detect changes in environment. The ability of adapt static inputs allows wide dynamic range as well sensitivity input including fold-change detection, a response that depends only on fold input, and not absolute changes. This scale invariance underlies an important strategy for search solely the spatial profile input. Synthetic efforts reproduce architecture cellular circuits provide step foster understanding at molecular level. We report bottom-up assembly biochemical show exact adaptation detection. Using malachite green aptamer output, synthetic transcriptional circuit with connectivity incoherent feed-forward loop motif exhibits pulse generation adaptation. A simple mathematical model was used assess amplitude duration parameter regimes required Upon tuning, this detection four successive rounds two-fold experimental realization highlights programmability switches obtain predictive dynamical cell-free environment technological applications.

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