A framework for large-scale dynamic metabolome drug profiling in mammalian cells: a case study analysis of the anti-cancer drug dichloroacetate

作者: Sébastien Dubuis , Karin Ortmayr , Mattia Zampieri

DOI: 10.1101/250670

关键词:

摘要: Metabolic profiling of cell line collections have become an invaluable tool to study disease etiology, drug modes action and personalized medicine. However, large-scale in vitro dynamic metabolic is limited by time-consuming sampling complex measurement procedures. By adapting MS-based metabolomics workflow for high-throughput diverse adherent mammalian cells, we establish a technique the rapid analysis drug-induced changes intracellular metabolites. This methodology scalable large compound libraries here applied mechanism underlying toxic effect dichloroacetate ovarian cancer lines. System-level responses revealed key unexpected role CoA imbalance toxicity. The herein proposed strategy complementary other molecular techniques, opening new scientific drug-discovery opportunities.

参考文章(72)
Jung Hoon Woo, Yishai Shimoni, Wan Seok Yang, Prem Subramaniam, Archana Iyer, Paola Nicoletti, María Rodríguez Martínez, Gonzalo López, Michela Mattioli, Ronald Realubit, Charles Karan, Brent R. Stockwell, Mukesh Bansal, Andrea Califano, Elucidating Compound Mechanism of Action by Network Perturbation Analysis Cell. ,vol. 162, pp. 441- 451 ,(2015) , 10.1016/J.CELL.2015.05.056
S Jackowski, C O Rock, Regulation of coenzyme A biosynthesis. Journal of Bacteriology. ,vol. 148, pp. 926- 932 ,(1981) , 10.1128/JB.148.3.926-932.1981
Andreas Kuehne, Hila Emmert, Joern Soehle, Marc Winnefeld, Frank Fischer, Horst Wenck, Stefan Gallinat, Lara Terstegen, Ralph Lucius, Janosch Hildebrand, Nicola Zamboni, Acute Activation of Oxidative Pentose Phosphate Pathway as First-Line Response to Oxidative Stress in Human Skin Cells Molecular Cell. ,vol. 59, pp. 359- 371 ,(2015) , 10.1016/J.MOLCEL.2015.06.017
J. D. Storey, R. Tibshirani, Statistical significance for genomewide studies Proceedings of the National Academy of Sciences of the United States of America. ,vol. 100, pp. 9440- 9445 ,(2003) , 10.1073/PNAS.1530509100
Stefanie Dietmair, Nicholas E Timmins, Peter P Gray, Lars K Nielsen, Jens O Krömer, None, Towards quantitative metabolomics of mammalian cells: Development of a metabolite extraction protocol Analytical Biochemistry. ,vol. 404, pp. 155- 164 ,(2010) , 10.1016/J.AB.2010.04.031
So-Youn Shin, , Eric B Fauman, Ann-Kristin Petersen, Jan Krumsiek, Rita Santos, Jie Huang, Matthias Arnold, Idil Erte, Vincenzo Forgetta, Tsun-Po Yang, Klaudia Walter, Cristina Menni, Lu Chen, Louella Vasquez, Ana M Valdes, Craig L Hyde, Vicky Wang, Daniel Ziemek, Phoebe Roberts, Li Xi, Elin Grundberg, Melanie Waldenberger, J Brent Richards, Robert P Mohney, Michael V Milburn, Sally L John, Jeff Trimmer, Fabian J Theis, John P Overington, Karsten Suhre, M Julia Brosnan, Christian Gieger, Gabi Kastenmüller, Tim D Spector, Nicole Soranzo, An atlas of genetic influences on human blood metabolites Nature Genetics. ,vol. 46, pp. 543- 550 ,(2014) , 10.1038/NG.2982
R LEONARDI, Y ZHANG, C ROCK, S JACKOWSKI, Coenzyme A: back in action. Progress in Lipid Research. ,vol. 44, pp. 125- 153 ,(2005) , 10.1016/J.PLIPRES.2005.04.001
R. Leonardi, C. O. Rock, S. Jackowski, Y.-M. Zhang, Activation of human mitochondrial pantothenate kinase 2 by palmitoylcarnitine Proceedings of the National Academy of Sciences of the United States of America. ,vol. 104, pp. 1494- 1499 ,(2007) , 10.1073/PNAS.0607621104
Charles O. Rock, Robert B. Calder, Mohammad A. Karim, Suzanne Jackowski, Pantothenate Kinase Regulation of the Intracellular Concentration of Coenzyme A Journal of Biological Chemistry. ,vol. 275, pp. 1377- 1383 ,(2000) , 10.1074/JBC.275.2.1377