Pyrosequencing for SNP genotyping.

作者: Jose Luis Royo , Jose Jorge Galán

DOI: 10.1007/978-1-60327-411-1_7

关键词:

摘要: Pyrosequencing is a real-time DNA sequencing method. It based on the transformation of pyrophosphates, released during elongation by polymerase, into measurable light. During elongation, single pyrophosphate molecule following incorporation nucleotide. In pyrosequencing reaction, pyrophosphates are then rapidly converted sulfurylase to adenosine triphosphate, which in turn utilized luciferase produce Within standardized conditions, this reaction accomplished few milliseconds and light produced can be registered with CCD camera. Therefore, it becomes possible quantitatively measure nucleotides incorporated. This approach has been automated different platforms used for wide variety applications, such as single-nucleotide polymorphism (SNP) genotyping, sequencing, loss heterozygosity analysis, CpG methylation studies. Here we describe entire process, focusing our attention SNP giving examples some other applications.

参考文章(11)
Dong-chuan Guo, Yuhua Qi, Rumin He, Prateek Gupta, Dianna M Milewicz, None, High throughput detection of small genomic insertions or deletions by Pyrosequencing. Biotechnology Letters. ,vol. 25, pp. 1703- 1707 ,(2003) , 10.1023/A:1026090218031
Corinne Loeuillet, Michael Weale, Samuel Deutsch, Margalida Rotger, Nicole Soranzo, Josiane Wyniger, Guillaume Lettre, Yann Dupré, Delphine Thuillard, Jacques S. Beckmann, Stylianos E. Antonarakis, David B. Goldstein, Amalio Telenti, Promoter polymorphisms and allelic imbalance in ABCB1 expression. Pharmacogenetics and Genomics. ,vol. 17, pp. 951- 959 ,(2007) , 10.1097/FPC.0B013E3282EFF934
Jose Luis Royo, Manuel Hidalgo Pascual, Ana Salinas, Francisco Jose Tello, Maria del Carmen Rivero, Eduardo Ferrero Herrero, Luis Miguel Real, Agustín Ruiz, None, Pyrosequencing protocol requiring a unique biotinylated primer Clinical Chemistry and Laboratory Medicine. ,vol. 44, pp. 435- 441 ,(2006) , 10.1515/CCLM.2006.072
Catharina Lavebratt, Selim Sengul, Single nucleotide polymorphism (SNP) allele frequency estimation in DNA pools using Pyrosequencing. Nature Protocols. ,vol. 1, pp. 2573- 2582 ,(2006) , 10.1038/NPROT.2006.442
Jose Luis Royo, Manuel Hidalgo, Agustin Ruiz, Pyrosequencing protocol using a universal biotinylated primer for mutation detection and SNP genotyping Nature Protocols. ,vol. 2, pp. 1734- 1739 ,(2007) , 10.1038/NPROT.2007.244
Manuel Hidalgo Pascual, José Luis Royo, Francisco Jose Martínez-Tello, Carmen Crespo, Ana Salinas, Eduardo Ferrero Herrero, María Lopez-García, Luis Miguel Real, Agustín Ruiz, Reposo Ramirez-Lorca, None, Exploring allelic imbalance within paraffin-embedded tumor biopsies using pyrosequencing technology. Clinical Chemistry and Laboratory Medicine. ,vol. 44, pp. 1076- 1081 ,(2006) , 10.1515/CCLM.2006.198
Angela M. Alexander, Christopher Pecoraro, Alexis Styche, William A. Rudert, Panayiotis V. Benos, Steven Ringquist, Massimo Trucco, SOP3: a web-based tool for selection of oligonucleotide primers for single nucleotide polymorphism analysis by Pyrosequencing® BioTechniques. ,vol. 38, pp. 87- 94 ,(2005) , 10.2144/05381RR01
Y. Korshunova, R. K. Maloney, N. Lakey, R. W. Citek, B. Bacher, A. Budiman, J. M. Ordway, W. R. McCombie, J. Leon, J. A. Jeddeloh, J. D. McPherson, Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA Genome Research. ,vol. 18, pp. 19- 29 ,(2007) , 10.1101/GR.6883307
M. Ronaghi, Pyrosequencing sheds light on DNA sequencing. Genome Research. ,vol. 11, pp. 3- 11 ,(2001) , 10.1101/GR.11.1.3