Papillomavirus E1 helicase assembly maintains an asymmetric state in the absence of DNA and nucleotide cofactors

作者: Cyril M. Sanders , Oleg V. Kovalevskiy , Dmytro Sizov , Andrey A. Lebedev , Michail N. Isupov

DOI: 10.1093/NAR/GKM705

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摘要: Concerted, stochastic and sequential mechanisms of action have been proposed for different hexameric AAA+ molecular motors. Here we report the crystal structure E1 helicase from bovine papillomavirus, where asymmetric assembly is first time observed in absence nucleotide cofactors DNA. Surprisingly, ATP-binding sites adopt specific conformations linked to positional changes DNA-binding hairpins, which follow a wave-like trajectory, as previously E1/DNA/ADP complex. The protein's thus maintains such an state DNA cofactors, allowing consideration propagation conformational wave around protein ring. data imply that wave's within domains not necessarily coupled with strictly hydrolysis ATP. Since single ATP event would affect whole hexamer, events may simply serve rectify direction motion.

参考文章(19)
Zbyszek Otwinowski, Wladek Minor, Processing of X-ray diffraction data collected in oscillation mode Methods in Enzymology. ,vol. 276, pp. 307- 326 ,(1997) , 10.1016/S0076-6879(97)76066-X
Erika J. Mancini, Denis E. Kainov, Jonathan M. Grimes, Roman Tuma, Dennis H. Bamford, David I. Stuart, Atomic Snapshots of an RNA Packaging Motor Reveal Conformational Changes Linking ATP Hydrolysis to RNA Translocation Cell. ,vol. 118, pp. 743- 755 ,(2004) , 10.1016/J.CELL.2004.09.007
Dahai Gai, Rui Zhao, Dawei Li, Carla V. Finkielstein, Xiaojiang S. Chen, Mechanisms of conformational change for a replicative hexameric helicase of SV40 large tumor antigen Cell. ,vol. 119, pp. 47- 60 ,(2004) , 10.1016/J.CELL.2004.09.017
Collaborative Computational Project, Number 4, The CCP4 suite: programs for protein crystallography Acta Crystallographica Section D-biological Crystallography. ,vol. 50, pp. 760- 763 ,(1994) , 10.1107/S0907444994003112
Martin R Singleton, Michael R Sawaya, Tom Ellenberger, Dale B Wigley, Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides. Cell. ,vol. 101, pp. 589- 600 ,(2000) , 10.1016/S0092-8674(00)80871-5
Alison Burgess Hickman, Fred Dyda, Binding and unwinding: SF3 viral helicases. Current Opinion in Structural Biology. ,vol. 15, pp. 77- 85 ,(2005) , 10.1016/J.SBI.2004.12.001
Lakshminarayan M Iyer, Detlef D Leipe, Eugene V Koonin, L Aravind, Evolutionary history and higher order classification of AAA+ ATPases. Journal of Structural Biology. ,vol. 146, pp. 11- 31 ,(2004) , 10.1016/J.JSB.2003.10.010
Sandrine Castella, Gregg Bingham, Cyril M Sanders, Common determinants in DNA melting and helicase-catalysed DNA unwinding by papillomavirus replication protein E1 Nucleic Acids Research. ,vol. 34, pp. 3008- 3019 ,(2006) , 10.1093/NAR/GKL384
G. N. Murshudov, A. A. Vagin, E. J. Dodson, Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallographica Section D-biological Crystallography. ,vol. 53, pp. 240- 255 ,(1997) , 10.1107/S0907444996012255
Panos Soultanas, Dale B Wigley, DNA helicases: 'inching forward'. Current Opinion in Structural Biology. ,vol. 10, pp. 124- 128 ,(2000) , 10.1016/S0959-440X(99)00059-7