TDB: new databases for biological discovery
作者： Owen White , Anthony R. Kerlavage
DOI: 10.1016/S0076-6879(96)66004-2
关键词:
摘要: Publisher Summary We are challenged with new ways to deal data accuracy, sequence redundancy, inconsistent nomenclature, and functional classification. The best way facilitate progress in this area is devise tools representations that allow the community carry out work. These include databases complex queries against data, as complements databanks now archive deposited sequences. This chapter discusses development of Institute for Genomic Research (TIGR, Rockville, MD), TIGR Database (TDB) a collection designed discovery biology. It presents unique having robust representation sequences associated information. have consistent semantics minimized redundancy compared archives, persistent identifiers allowing extensive links be established among data. play key role analysis interpretation from DNA sequencing projects many species.
sci-hub.se 参考文章(16)
Mark D Adams, Anthony R Kerlavage, Robert D Fleischmann, Rebecca A Fuldner, Carol J Bult, Norman H Lee, Ewen F Kirkness, Keith G Weinstock, Jeannine D Gocayne, Owen White, None, Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature. ,vol. 377, pp. 3- 174 ,(1995)
J. Kaiser, Can Deep Bacteria Live on Nothing But Rocks and Water Science. ,vol. 270, pp. 377- 377 ,(1995) , 10.1126/SCIENCE.270.5235.377
P.L. Pearson, N.W. Matheson, D.C. Flescher, R.J. Robbins, The GDB human genome data base anno 1993. Nucleic Acids Research. ,vol. 21, pp. 3003- 3006 ,(1992) , 10.1093/NAR/20.SUPPL.2201
Robert D Fleischmann, Mark D Adams, Owen White, Rebecca A Clayton, Ewen F Kirkness, Anthony R Kerlavage, Carol J Bult, Jean-Francois Tomb, Brian A Dougherty, Joseph M Merrick, Keith McKenney, Granger Sutton, Will FitzHugh, Chris Fields, Jeannine D Gocayne, John Scott, Robert Shirley, Li-lng Liu, Anna Glodek, Jenny M Kelley, Janice F Weidman, Cheryl A Phillips, Tracy Spriggs, Eva Hedblom, Matthew D Cotton, Teresa R Utterback, Michael C Hanna, David T Nguyen, Deborah M Saudek, Rhonda C Brandon, Leah D Fine, Janice L Fritchman, Joyce L Fuhrmann, NSM Geoghagen, Cheryl L Gnehm, Lisa A McDonald, Keith V Small, Claire M Fraser, Hamilton O Smith, J Craig Venter, Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science. ,vol. 269, pp. 496- 512 ,(1995) , 10.1126/SCIENCE.7542800
Nickolas Papadopoulos, Nicholas C Nicolaides, Ying-Fei Wei, Steven M Ruben, Kenneth C Carter, Craig A Rosen, William A Haseltine, Robert D Fleischmann, Claire M Fraser, Mark D Adams, J Craig Venter, Stanley R Hamilton, Gloria M Petersen, Patrice Watson, Henry T Lynch, Päivi Peltomäki, Jukka-Pekka Mecklin, Albert De La Chapelle, Kenneth W Kinzler, Bert Vogelstein, Mutation of a mutL homolog in hereditary colon cancer Science. ,vol. 263, pp. 1625- 1629 ,(1994) , 10.1126/SCIENCE.8128251
Gabriele Dodt, Nancy Braverman, Candice Wong, Ann Moser, Hugo W. Moser, Paul Watkins, David Valle, Stephen J. Gould, Mutations in the PTS1 receptor gene, PXR1, define complementation group 2 of the peroxisome biogenesis disorders Nature Genetics. ,vol. 9, pp. 115- 125 ,(1995) , 10.1038/NG0295-115
Owen White, Ted Dunning, Granger Sutton, Mark Adams, J. Craig Venter, Chris Fields, A quality control algorithm for DNA sequencing projects Nucleic Acids Research. ,vol. 21, pp. 3829- 3838 ,(1993) , 10.1093/NAR/21.16.3829
C. M. Fraser, J. D. Gocayne, O. White, M. D. Adams, R. A. Clayton, R. D. Fleischmann, C. J. Bult, A. R. Kerlavage, G. Sutton, J. M. Kelley, J. L. Fritchman, J. F. Weidman, K. V. Small, M. Sandusky, J. Fuhrmann, D. Nguyen, T. R. Utterback, D. M. Saudek, C. A. Phillips, J. M. Merrick, J.-F. Tomb, B. A. Dougherty, K. F. Bott, P.-C. Hu, T. S. Lucier, The minimal gene complement of Mycoplasma genitalium Science. ,vol. 270, pp. 397- 403 ,(1995) , 10.1126/SCIENCE.270.5235.397
Mark S. Boguski, Todd M.J. Lowe, Carolyn M. Tolstoshev, dbEST — database for “expressed sequence tags” Nature Genetics. ,vol. 4, pp. 332- 333 ,(1993) , 10.1038/NG0893-332
S Altschula, Warren Gisha, Webb Millerb, E Meyersc, D Lipmana, None, Basic Local Alignment Search Tool Journal of Molecular Biology. ,vol. 215, pp. 403- 410 ,(1990) , 10.1016/S0022-2836(05)80360-2