A 2'-deoxycytidine long-linker click adduct forming two conformers in the asymmetric unit.

作者: Frank Seela , Hai Xiong , Simone Budow , Henning Eickmeier , Hans Reuter

DOI: 10.1107/S0108270112010682

关键词:

摘要: The title compound {systematic name: 4-amino-1-(2-deoxy-β-D-erythro-pentofuranosyl)-5-[6-(1-benzyl-1H-1,2,3-triazol-4-yl)hex-1-ynyl]pyrimidin-2(1H)-one}, C(24)H(28)N(6)O(4), shows two conformations in the crystalline state, viz. (I-1) and (I-2). pyrimidine groups side chains of conformers are almost superimposable, while greatest differences between them observed for sugar groups. N-glycosylic bonds both adopt similar anti conformations, with χ = -168.02 (12)° conformer -159.08 (12)° residue an N-type (C3'-endo) conformation, P 33.1 (2)° τ(m) 29.5 (1)°, conformation 2'-deoxyribofuranosyl group (I-2) is S-type (C3'-exo), P = 204.5 (2)° 33.8 (1)°. Both participate hydrogen-bond formation exhibit identical patterns resulting three-dimensional networks. Intermolecular hydrogen formed neighbouring molecules different (N-H...N, N-H... O, O-H...N O-H...O).

参考文章(20)
H. D. Flack, On enantiomorph‐polarity estimation Acta Crystallographica Section A. ,vol. 39, pp. 876- 881 ,(1983) , 10.1107/S0108767383001762
George M. Sheldrick, A short history of SHELX Acta Crystallographica Section A. ,vol. 64, pp. 112- 122 ,(2008) , 10.1107/S0108767307043930
Petr Kočalka, Afaf H. El-Sagheer, Tom Brown, Rapid and Efficient DNA Strand Cross-Linking by Click Chemistry ChemBioChem. ,vol. 9, pp. 1280- 1285 ,(2008) , 10.1002/CBIC.200800006
John E. Moses, Adam D. Moorhouse, The growing applications of click chemistry Chemical Society Reviews. ,vol. 36, pp. 1249- 1262 ,(2007) , 10.1039/B613014N
Anthony L. Spek, Structure validation in chemical crystallography Acta Crystallographica Section D-biological Crystallography. ,vol. 65, pp. 148- 155 ,(2009) , 10.1107/S090744490804362X
Rob W. W. Hooft, Leo H. Straver, Anthony L. Spek, Determination of absolute structure using Bayesian statistics on Bijvoet differences. Journal of Applied Crystallography. ,vol. 41, pp. 96- 103 ,(2008) , 10.1107/S0021889807059870
Hartmuth C Kolb, K.Barry Sharpless, The growing impact of click chemistry on drug discovery Drug Discovery Today. ,vol. 8, pp. 1128- 1137 ,(2003) , 10.1016/S1359-6446(03)02933-7
Afaf H. El-Sagheer, Tom Brown, Click chemistry with DNA Chemical Society Reviews. ,vol. 39, pp. 1388- 1405 ,(2010) , 10.1039/B901971P
Nicolai Krog Andersen, Holger Døssing, Frank Jensen, Birte Vester, Poul Nielsen, Duplex and Triplex Formation of Mixed Pyrimidine Oligonucleotides with Stacking of Phenyl-triazole Moieties in the Major Groove Journal of Organic Chemistry. ,vol. 76, pp. 6177- 6187 ,(2011) , 10.1021/JO200919Y