Tabix: Fast retrieval of sequence features from generic TAB-delimited files
作者： H. Li
DOI: 10.1093/BIOINFORMATICS/BTQ671
关键词:
摘要: Summary: Tabix is the first generic tool that indexes position sorted files in TAB-delimited formats such as GFF, BED, PSL, SAM and SQL export, quickly retrieves features overlapping specified regions. include few seek function calls per query, data compression with gzip compatibility direct FTP/HTTP access. implemented a free command-line well library C, Java, Perl Python. It particularly useful for manually examining local genomic on command line enables genome viewers to support huge remote custom tracks over networks. Availability Implementation: http://samtools.sourceforge.net. Contact: gro.etutitsnidaorb@ilgneh
oup.com
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oxfordjournals.org参考文章(7)
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