STABILITY OF EXPERIMENTAL TRANSCRIPTOMIC AND PROTEOMIC DATA 2

Patrick Warnat, Roland Eils, Benedikt Brors, Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes. BMC Bioinformatics. ,vol. 6, pp. 265- 265 ,(2005) , 10.1186/1471-2105-6-265

Boris N. Kholodenko, Oleg V. Demin, Gisela Moehren, Jan B. Hoek, Quantification of Short Term Signaling by the Epidermal Growth Factor Receptor Journal of Biological Chemistry. ,vol. 274, pp. 30169- 30181 ,(1999) , 10.1074/JBC.274.42.30169

J. van Delft, S. Gaj, M. Lienhard, M. W. Albrecht, A. Kirpiy, K. Brauers, S. Claessen, D. Lizarraga, H. Lehrach, R. Herwig, J. Kleinjans, RNA-Seq Provides New Insights in the Transcriptome Responses Induced by the Carcinogen Benzo[a]pyrene Toxicological Sciences. ,vol. 130, pp. 427- 439 ,(2012) , 10.1093/TOXSCI/KFS250

Nino Demetrashvili, Ken Kron, Vaijayanti Pethe, Bharati Bapat, Laurent Briollais, How to Deal with Batch Effect in Sequential Microarray Experiments Molecular Informatics. ,vol. 29, pp. 387- 393 ,(2010) , 10.1002/MINF.200900019

Xiao Xu, Yuanhao Zhang, Jennie Williams, Eric Antoniou, W McCombie, Song Wu, Wei Zhu, Nicholas O Davidson, Paula Denoya, Ellen Li, Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets BMC Bioinformatics. ,vol. 14, pp. 1- 14 ,(2013) , 10.1186/1471-2105-14-S9-S1

Douglas Hanahan, Robert A Weinberg, The hallmarks of cancer. Cell. ,vol. 100, pp. 57- 70 ,(2000) , 10.1016/S0092-8674(00)81683-9

Sang Cheol Kim, Yeonjoo Jung, Jinah Park, Sooyoung Cho, Chaehwa Seo, Jaesang Kim, Pora Kim, Jehwan Park, Jihae Seo, Jiwoong Kim, Seongjin Park, Insu Jang, Namshin Kim, Jin Ok Yang, Byungwook Lee, Kyoohyoung Rho, Yeonhwa Jung, Juhee Keum, Jinseon Lee, Jungho Han, Sangeun Kang, Sujin Bae, So-Jung Choi, Sujin Kim, Jong-Eun Lee, Wankyu Kim, Jhingook Kim, Sanghyuk Lee, None, A High-Dimensional, Deep-Sequencing Study of Lung Adenocarcinoma in Female Never-Smokers PLoS ONE. ,vol. 8, pp. e55596- ,(2013) , 10.1371/JOURNAL.PONE.0055596

Philip Jones, Richard G Côté, Lennart Martens, Antony F Quinn, Chris F Taylor, William Derache, Henning Hermjakob, Rolf Apweiler, PRIDE: a public repository of protein and peptide identifications for the proteomics community Nucleic Acids Research. ,vol. 34, pp. 659- 663 ,(2006) , 10.1093/NAR/GKJ138

Alex Zhavoronkov, Anton A. Buzdin, Andrey V. Garazha, Nikolay M. Borisov, Alexey A. Moskalev, Signaling pathway cloud regulation for in silico screening and ranking of the potential geroprotective drugs. Frontiers in Genetics. ,vol. 5, pp. 49- 49 ,(2014) , 10.3389/FGENE.2014.00049

Purvesh Khatri, Marina Sirota, Atul J. Butte, Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges PLoS Computational Biology. ,vol. 8, pp. e1002375- ,(2012) , 10.1371/JOURNAL.PCBI.1002375