Theoretical studies of the function switch and mechanism of AceK as a highly active ATPase

作者: Jiajia Qin , Hongwei Tan , Xichen Li , Guangju Chen , Jimin Zheng

DOI: 10.1039/C6RA11873A

关键词:

摘要: As a multi-function enzyme, AceK integrates kinase, phosphatase and ATPase activities in single active site. In contrast to most kinases, exhibits unusually high activity compared its kinase activities. The reason that possesses such regulation are still elusive. this work, we have employed DFT methods exploit the ATP hydrolysis mechanism of revealed dissociative pathway with an activation energy only 17.85 kcal mol−1, which is highly favorable for activity. may play role producing ADP as proton acceptor fulfill function. Based on our calculation structural analysis, binding substrate ICDH causes catalytically important residue, Asp477, flip over further suppress markedly increased 21.68 thus favoring or Our work has shed new light function switch AceK.

参考文章(28)
C S Stueland, K R Eck, K T Stieglbauer, D C LaPorte, Isocitrate dehydrogenase kinase/phosphatase exhibits an intrinsic adenosine triphosphatase activity. Journal of Biological Chemistry. ,vol. 262, pp. 16095- 16099 ,(1987) , 10.1016/S0021-9258(18)47700-9
C S Stueland, T P Ikeda, D C LaPorte, Mutation of the predicted ATP binding site inactivates both activities of isocitrate dehydrogenase kinase/phosphatase. Journal of Biological Chemistry. ,vol. 264, pp. 13775- 13779 ,(1989) , 10.1016/S0021-9258(18)80068-0
Margareta R. A. Blomberg, Tomasz Borowski, Fahmi Himo, Rong-Zhen Liao, Per E. M. Siegbahn, Quantum chemical studies of mechanisms for metalloenzymes. Chemical Reviews. ,vol. 114, pp. 3601- 3658 ,(2014) , 10.1021/CR400388T
R. Krishnan, J. S. Binkley, R. Seeger, J. A. Pople, Self‐consistent molecular orbital methods. XX. A basis set for correlated wave functions Journal of Chemical Physics. ,vol. 72, pp. 650- 654 ,(1980) , 10.1063/1.438955
Axel D. Becke, A New Mixing of Hartree-Fock and Local Density-Functional Theories Journal of Chemical Physics. ,vol. 98, pp. 1372- 1377 ,(1993) , 10.1063/1.464304
Jimin Zheng, Alan Xian Ji, Zongchao Jia, Purification, crystallization and preliminary X-ray analysis of bifunctional isocitrate dehydrogenase kinase/phosphatase in complex with its substrate, isocitrate dehydrogenase, from Escherichia coli. Acta Crystallographica Section F-structural Biology and Crystallization Communications. ,vol. 65, pp. 1153- 1156 ,(2009) , 10.1107/S1744309109038718
J. Akola, R. O. Jones, Density Functional Calculations of ATP Systems. 2. ATP Hydrolysis at the Active Site of Actin Journal of Physical Chemistry B. ,vol. 110, pp. 8121- 8129 ,(2006) , 10.1021/JP054921D
B. L. Grigorenko, A. V. Rogov, I. A. Topol, S. K. Burt, H. M. Martinez, A. V. Nemukhin, Mechanism of the myosin catalyzed hydrolysis of ATP as rationalized by molecular modeling Proceedings of the National Academy of Sciences of the United States of America. ,vol. 104, pp. 7057- 7061 ,(2007) , 10.1073/PNAS.0701727104
R. A. Kendall, thom H. Dunning, Jr., Robert J. Harrison, Electron affinities of the first-row atoms revisited. Systematic basis sets and wave functions Journal of Chemical Physics. ,vol. 96, pp. 6796- 6806 ,(1992) , 10.1063/1.462569
Stephen P. Miller, Elizabeth J. Karschnia, Timothy P. Ikeda, David C. LaPorte, Isocitrate Dehydrogenase Kinase/Phosphatase KINETIC CHARACTERISTICS OF THE WILD-TYPE AND TWO MUTANT PROTEINS Journal of Biological Chemistry. ,vol. 271, pp. 19124- 19128 ,(1996) , 10.1074/JBC.271.32.19124