The Computational Chemistry Prototyping Environment

作者: K.K. Baldridge , J.P. Greenberg , W. Sudholt , S. Mock , I. Altintas

DOI: 10.1109/JPROC.2004.842747

关键词:

摘要: Evolving technologies, as exemplified by computational grids and Web services, have made it possible to solve new scientific problems that would not been feasible previously. In order make such advances available the community in general be able problems, necessarily from same discipline, is imperative build tools provide a common user interface application programmers users do concerned with particulars of services their underlying code, platforms, or data file formats. We will describe our efforts creating chemistry environment encompasses workflow environment, domain specific example for quantum chemistry, ongoing design interface, at database integration.

参考文章(17)
Kim K. Baldridge, Jerry P. Greenberg, QMVIEW: As a Supramolecular Visualization Tool Springer Netherlands. pp. 169- 177 ,(1995) , 10.1007/978-94-011-0353-4_20
Michael Shirts, Stefan M Larson, Christopher D Snow, Vijay S Pande, Folding@Home and Genome@Home: Using distributed computing to tackle previously intractable problems in computational biology arXiv: Biological Physics. ,(2009)
Wibke Sudholt, Kim K. Baldridge, David Abramson, Colin Enticott, Slavisa Garic, Applying Grid Computing to the Parameter Sweep of a Group Difference Pseudopotential international conference on computational science. ,vol. 3036, pp. 148- 155 ,(2004) , 10.1007/978-3-540-24685-5_19
Andrew Chien, Brad Calder, Stephen Elbert, Karan Bhatia, Entropia: architecture and performance of an enterprise desktop grid system Journal of Parallel and Distributed Computing. ,vol. 63, pp. 597- 610 ,(2003) , 10.1016/S0743-7315(03)00006-6
Michael W. Schmidt, Kim K. Baldridge, Jerry A. Boatz, Steven T. Elbert, Mark S. Gordon, Jan H. Jensen, Shiro Koseki, Nikita Matsunaga, Kiet A. Nguyen, Shujun Su, Theresa L. Windus, Michel Dupuis, John A. Montgomery, General atomic and molecular electronic structure system Journal of Computational Chemistry. ,vol. 14, pp. 1347- 1363 ,(1993) , 10.1002/JCC.540141112
N. A. Baker, D. Sept, S. Joseph, M. J. Holst, J. A. McCammon, Electrostatics of nanosystems: Application to microtubules and the ribosome Proceedings of the National Academy of Sciences of the United States of America. ,vol. 98, pp. 10037- 10041 ,(2001) , 10.1073/PNAS.181342398
Bojan Zagrovic, Christopher D. Snow, Michael R. Shirts, Vijay S. Pande, Simulation of Folding of a Small Alpha-helical Protein in Atomistic Detail using Worldwide-distributed Computing Journal of Molecular Biology. ,vol. 323, pp. 927- 937 ,(2002) , 10.1016/S0022-2836(02)00997-X
Kim K. Baldridge, Jerry P. Greenberg, QMView: A computational chemistry three-dimensional visualization tool at the interface between molecules and mankind Journal of Molecular Graphics. ,vol. 13, pp. 63- 66 ,(1995) , 10.1016/0263-7855(94)00002-A
David A Pearlman, David A Case, James W Caldwell, Wilson S Ross, Thomas E Cheatham III, Steve DeBolt, David Ferguson, George Seibel, Peter Kollman, None, AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules Computer Physics Communications. ,vol. 91, pp. 1- 41 ,(1995) , 10.1016/0010-4655(95)00041-D
G. Obertelli, F. Berman, R. Wolski, H. Casanova, The AppLeS Parameter Sweep Template: User-Level Middleware for the Grid conference on high performance computing (supercomputing). ,vol. 8, pp. 111- 126 ,(2000) , 10.5555/370049.370499