Targeted next-generation sequencing: a Swiss army knife for mycobacterial diagnostics?

作者: Claudio U. Köser , Wladimir Sougakoff , Scott K. Heysell , Sagal Mohamed , Max Salfinger

DOI: 10.1183/13993003.04077-2020

关键词:

摘要: … Like a multifunctional Swiss army knife, Deeplex offers unprecedented versatility directly from the clinical sample and represents a welcome addition to the diagnostic and …

参考文章(29)
Rebecca E. Colman, James M. Schupp, Nathan D. Hicks, David E. Smith, Jordan L. Buchhagen, Faramarz Valafar, Valeriu Crudu, Elena Romancenco, Ecaterina Noroc, Lynn Jackson, Donald G. Catanzaro, Timothy C. Rodwell, Antonino Catanzaro, Paul Keim, David M. Engelthaler, Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing PLOS ONE. ,vol. 10, pp. e0126626- ,(2015) , 10.1371/JOURNAL.PONE.0126626
T.M. Walker, P. Monk, E. Grace Smith, T.E.A. Peto, Contact investigations for outbreaks of Mycobacterium tuberculosis: advances through whole genome sequencing Clinical Microbiology and Infection. ,vol. 19, pp. 796- 802 ,(2013) , 10.1111/1469-0691.12183
Scarlet S. Shell, Jing Wang, Pascal Lapierre, Mushtaq Mir, Michael R. Chase, Margaret M. Pyle, Richa Gawande, Rushdy Ahmad, David A. Sarracino, Thomas R. Ioerger, Sarah M. Fortune, Keith M. Derbyshire, Joseph T. Wade, Todd A. Gray, Leaderless Transcripts and Small Proteins Are Common Features of the Mycobacterial Translational Landscape PLOS Genetics. ,vol. 11, pp. e1005641- ,(2015) , 10.1371/JOURNAL.PGEN.1005641
Elisabeth Sanchez-Padilla, Matthias Merker, Patrick Beckert, Frauke Jochims, Themba Dlamini, Patricia Kahn, Maryline Bonnet, Stefan Niemann, None, Detection of Drug-Resistant Tuberculosis by Xpert MTB/RIF in Swaziland New England Journal of Medicine. ,vol. 372, pp. 1181- 1182 ,(2015) , 10.1056/NEJMC1413930
Hugo Sax, Guido Bloemberg, Barbara Hasse, Rami Sommerstein, Philipp Kohler, Yvonne Achermann, Matthias Rössle, Volkmar Falk, Stefan P Kuster, Erik C Böttger, Rainer Weber, None, Prolonged Outbreak of Mycobacterium chimaera Infection After Open-Chest Heart Surgery Clinical Infectious Diseases. ,vol. 61, pp. 67- 75 ,(2015) , 10.1093/CID/CIV198
Xiaomao Yin, Lei Zheng, Li Lin, Yarong Hu, Fen Zheng, Yanwei Hu, Qian Wang, Commercial MPT64-based tests for rapid identification of Mycobacterium tuberculosis complex: A meta-analysis Journal of Infection. ,vol. 67, pp. 369- 377 ,(2013) , 10.1016/J.JINF.2013.06.009
Claudio U. Köser, Matthew J. Ellington, Edward J. P. Cartwright, Stephen H. Gillespie, Nicholas M. Brown, Mark Farrington, Matthew T. G. Holden, Gordon Dougan, Stephen D. Bentley, Julian Parkhill, Sharon J. Peacock, Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology PLOS Pathogens. ,vol. 8, ,(2012) , 10.1371/JOURNAL.PPAT.1002824
Enrico Tortoli, Monica Pecorari, Giuliana Fabio, Massimino Messinò, Anna Fabio, Commercial DNA Probes for Mycobacteria Incorrectly Identify a Number of Less Frequently Encountered Species Journal of Clinical Microbiology. ,vol. 48, pp. 307- 310 ,(2010) , 10.1128/JCM.01536-09
T. Schön, P. Miotto, C.U. Köser, M. Viveiros, E. Böttger, E. Cambau, Mycobacterium tuberculosis drug-resistance testing: challenges, recent developments and perspectives Clinical Microbiology and Infection. ,vol. 23, pp. 154- 160 ,(2017) , 10.1016/J.CMI.2016.10.022
Josephine M. Bryant, Dorothy M. Grogono, Daniela Rodriguez-Rincon, Isobel Everall, Karen P. Brown, Pablo Moreno, Deepshikha Verma, Emily Hill, Judith Drijkoningen, Peter Gilligan, Charles R. Esther, Peadar G. Noone, Olivia Giddings, Scott C. Bell, Rachel Thomson, Claire E. Wainwright, Chris Coulter, Sushil Pandey, Michelle E. Wood, Rebecca E. Stockwell, Kay A. Ramsay, Laura J. Sherrard, Timothy J. Kidd, Nassib Jabbour, Graham R. Johnson, Luke D. Knibbs, Lidia Morawska, Peter D. Sly, Andrew Jones, Diana Bilton, Ian Laurenson, Michael Ruddy, Stephen Bourke, Ian C. J. W. Bowler, Stephen J. Chapman, Andrew Clayton, Mairi Cullen, Owen Dempsey, Miles Denton, Maya Desai, Richard J. Drew, Frank Edenborough, Jason Evans, Jonathan Folb, Thomas Daniels, Helen Humphrey, Barbara Isalska, Søren Jensen-Fangel, Bodil Jönsson, Andrew M. Jones, Terese L. Katzenstein, Troels Lillebaek, Gordon MacGregor, Sarah Mayell, Michael Millar, Deborah Modha, Edward F. Nash, Christopher O’Brien, Deirdre O’Brien, Chandra Ohri, Caroline S. Pao, Daniel Peckham, Felicity Perrin, Audrey Perry, Tania Pressler, Laura Prtak, Tavs Qvist, Ali Robb, Helen Rodgers, Kirsten Schaffer, Nadia Shafi, Jakko van Ingen, Martin Walshaw, Danie Watson, Noreen West, Joanna Whitehouse, Charles S. Haworth, Simon R. Harris, Diane Ordway, Julian Parkhill, R. Andres Floto, Emergence and spread of a human-transmissible multidrug-resistant nontuberculous mycobacterium. Science. ,vol. 354, pp. 751- 757 ,(2016) , 10.1126/SCIENCE.AAF8156