Development and characterization of 20 polymorphic microsatellite markers for Epinephelus marginatus (Lowe, 1834) (Perciformes: Epinephelidae) using 454 pyrosequencing.

作者: Jussara Oliveira Vaini , Kenneth Gabriel Mota , Alejandra Paola Ojeda , João Pedro Barreiros , Renata Guimarães Moreira

DOI: 10.1590/1678-4685-GMB-2018-0067

关键词:

摘要: The dusky grouper, Epinephelus marginatus, is a well-known and widespread marine fish assessed as endangered by the International Union for Conservation of Nature. Analyzing genetic diversity this species is, therefore, utmost importance necessary conservation purposes. Microsatellites are molecular tools with advantages that ideal population analyses. This study provides first set species-specific microsatellite loci E. marginatus can be applied when assessing both intra- interpopulation variation. Twenty were isolated characterized grouper genotyping 20 individuals obtained from North Eastern Atlantic Ocean (n = 4) South Western 16). number alleles per locus varied 2 to 11, while observed expected heterozygosities ranged 0.25 0.94 0.34 0.89, respectively. polymorphic information content moderately highly informative. suite markers specific nuclear and, thus, allows assess more specificity different populations' structures.

参考文章(45)
Annalie V. Morris, Callum M. Roberts, Julie P. Hawkins, The threatened status of groupers (Epinephelinae) Biodiversity and Conservation. ,vol. 9, pp. 919- 942 ,(2000) , 10.1023/A:1008996002822
Sabina de Innocentiis, Alessandro Longobardi, Giovanna Marino, Molecular Tools in a Marine Restocking Program for the Endangered Dusky Grouper, Epinephelus marginatus Reviews in Fisheries Science. ,vol. 16, pp. 269- 277 ,(2008) , 10.1080/10641260701678348
M. R. Rico, E. M. Acha, Southernmost occurrence of Epinephelus marginatus in the south-west Atlantic Journal of Fish Biology. ,vol. 63, pp. 1621- 1624 ,(2003) , 10.1111/J.1095-8649.2003.00271.X
Lili Zhao, Changwei Shao, Xiaolin Liao, Hongyu Ma, Xuechun Zhu, Songlin Chen, Twelve novel polymorphic microsatellite loci for the Yellow grouper (Epinephelus awoara) and cross-species amplifications Conservation Genetics. ,vol. 10, pp. 743- 745 ,(2009) , 10.1007/S10592-008-9635-9
G. Marino, E. Azzurro, A. Massari, M. G. Finoia, A. Mandich, Reproduction in the dusky grouper from the southern Mediterranean Journal of Fish Biology. ,vol. 58, pp. 909- 927 ,(2001) , 10.1111/J.1095-8649.2001.TB00544.X
Seifu Seyoum, Michael D. Tringali, Brandon L. Barthel, Cecilia Puchulutegui, Michelle C. Davis, Angela B. Collins, Matthew T. Craig, Isolation and characterization of 29 polymorphic microsatellite markers for the endangered Atlantic goliath grouper (Epinephelus itajara), and the Pacific goliath grouper (E. quinquefasciatus) Conservation Genetics Resources. ,vol. 5, pp. 729- 732 ,(2013) , 10.1007/S12686-013-9892-X
Sun Wei Guo, Elizabeth A. Thompson, Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics. ,vol. 48, pp. 361- 372 ,(1992) , 10.2307/2532296
Francois Rousset, None, genepop'007: a complete re-implementation of the genepop software for Windows and Linux Molecular Ecology Resources. ,vol. 8, pp. 103- 106 ,(2008) , 10.1111/J.1471-8286.2007.01931.X