Multicenter CT phantoms public dataset for radiomics reproducibility tests

作者: Petros Kalendralis , Alberto Traverso , Zhenwei Shi , Ivan Zhovannik , René Monshouwer

DOI: 10.1002/MP.13385

关键词:

摘要: Purpose: The aim of this paper is to describe a public, open-access, computed tomography (CT) phantom image set acquired at three centers and collected especially for radiomics reproducibility research. dataset useful test radiomic features with respect various parameters, such as acquisition settings, scanners, reconstruction algorithms. Acquisition validation methods: Three phantoms were scanned in independent institutions. Images the following acquired: Catphan 700 COPDGene Phantom II (Phantom Laboratory, Greenwich, NY, USA), Triple modality 3D Abdominal (CIRS, Norfolk, VA, USA). Data Dutch medical centers: MAASTRO Clinic (Maastricht, NL), Radboud University Medical Center (Nijmegen, Groningen (Groningen, NL) scanners from two different manufacturers Siemens Healthcare Philips Healthcare. parameter varied scans: slice thickness, kernels, tube current. format usage notes: We made publically available on instance “Extensible Neuroimaging Archive Toolkit-XNAT” (https://xnat.bmia.nl). freely reusable attribution (Creative Commons 3.0 license). Potential applications: Our goal was provide findable, annotated, CT studies. Reproducibility testing harmonization are fundamental requirements wide generalizability radiomics-based clinical prediction models. It highly desirable include only reproducible into models, be more assured external validity across hitherto unseen contexts. In view, data represent valuable source information exclude that may already unstable simplified structures tightly controlled scan settings. intended extension our shared other modalities realistic lesion simulations.

参考文章(20)
Daniel S. Marcus, Timothy R. Olsen, Mohana Ramaratnam, Randy L. Buckner, The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data. Neuroinformatics. ,vol. 5, pp. 11- 33 ,(2007) , 10.1385/NI:5:1:11
Binsheng Zhao, Yongqiang Tan, Wei Yann Tsai, Lawrence H. Schwartz, Lin Lu, Exploring Variability in CT Characterization of Tumors: A Preliminary Phantom Study. Translational Oncology. ,vol. 7, pp. 88- 93 ,(2014) , 10.1593/TLO.13865
G. S. Collins, J. B. Reitsma, D. G. Altman, K. G. M. Moons, Transparent reporting of a multivariable prediction model for individual prognosis or diagnosis (TRIPOD): The TRIPOD statement BMJ. ,vol. 350, pp. 251- 259 ,(2015) , 10.1136/BMJ.G7594
Sugama Chicklore, Vicky Goh, Musib Siddique, Arunabha Roy, Paul K. Marsden, Gary J. R. Cook, Quantifying Tumour Heterogeneity in 18F-FDG PET/CT Imaging by Texture Analysis European Journal of Nuclear Medicine and Molecular Imaging. ,vol. 40, pp. 133- 140 ,(2013) , 10.1007/S00259-012-2247-0
Yoganand Balagurunathan, Yuhua Gu, Hua Wang, Virendra Kumar, Olya Grove, Sam Hawkins, Jongphil Kim, Dmitry B. Goldgof, Lawrence O. Hall, Robert A. Gatenby, Robert J. Gillies, Reproducibility and Prognosis of Quantitative Features Extracted from CT Images. Translational Oncology. ,vol. 7, pp. 72- 87 ,(2014) , 10.1593/TLO.13844
Kevin A. Archie, Daniel S. Marcus, DicomBrowser: software for viewing and modifying DICOM metadata. Journal of Digital Imaging. ,vol. 25, pp. 635- 645 ,(2012) , 10.1007/S10278-012-9462-X
Virendra Kumar, Yuhua Gu, Satrajit Basu, Anders Berglund, Steven A. Eschrich, Matthew B. Schabath, Kenneth Forster, Hugo J.W.L. Aerts, Andre Dekker, David Fenstermacher, Dmitry B. Goldgof, Lawrence O. Hall, Philippe Lambin, Yoganand Balagurunathan, Robert A. Gatenby, Robert J. Gillies, Radiomics: the process and the challenges Magnetic Resonance Imaging. ,vol. 30, pp. 1234- 1248 ,(2012) , 10.1016/J.MRI.2012.06.010
Amit K. Das, Marcus H. Bell, Chaitanya S. Nirodi, Michael D. Story, John D. Minna, Radiogenomics predicting tumor responses to radiotherapy in lung cancer. Seminars in Radiation Oncology. ,vol. 20, pp. 149- 155 ,(2010) , 10.1016/J.SEMRADONC.2010.01.002
Philippe Lambin, Emmanuel Rios-Velazquez, Ralph Leijenaar, Sara Carvalho, Ruud G.P.M. van Stiphout, Patrick Granton, Catharina M.L. Zegers, Robert Gillies, Ronald Boellard, André Dekker, Hugo J.W.L. Aerts, Radiomics: extracting more information from medical images using advanced feature analysis. European Journal of Cancer. ,vol. 48, pp. 441- 446 ,(2012) , 10.1016/J.EJCA.2011.11.036
Leonard Fass, Imaging and cancer: A review Molecular Oncology. ,vol. 2, pp. 115- 152 ,(2008) , 10.1016/J.MOLONC.2008.04.001