Analysing georeferenced population genetics data with Geneland

作者: Gilles Guillot , Filipe Santos , Arnaud Estoup

DOI: 10.1093/BIOINFORMATICS/BTN136

关键词:

摘要: Summary: We introduce a new algorithm to account for the presence of null alleles in inferences populations clusters from individual multilocus genetic data. show by simulations that can affect accuracy if not properly accounted and our improve signficantly their accuracy. Availability: This is implemented program Geneland. It freely available under GNU public license as an R package on Comprehensive Archive Network. now includes fully clickable graphical interface. Informations how get software are folk.uio.no/gillesg/Geneland.html Contact: gilles.guillot@bio.uio.no Supplementary information: Details simulation study folk.uio.no/gillesg/BioInformatics_Geneland

参考文章(6)
G. R. Sutherland, R. I. Richards, Yang Shen, H. A. Phillips, A. D. Thompson, D. F. Callen, J. C. Mulley, Incidence and origin of "null" alleles in the (AC)n microsatellite markers. American Journal of Human Genetics. ,vol. 52, pp. 922- 927 ,(1993)
François Pompanon, Aurélie Bonin, Eva Bellemain, Pierre Taberlet, Genotyping errors: causes, consequences and solutions. Nature Reviews Genetics. ,vol. 6, pp. 847- 859 ,(2005) , 10.1038/NRG1707
E E Dakin, J C Avise, Microsatellite null alleles in parentage analysis. Heredity. ,vol. 93, pp. 504- 509 ,(2004) , 10.1038/SJ.HDY.6800545
Laurent Excoffier, Gerald Heckel, Computer programs for population genetics data analysis: a survival guide Nature Reviews Genetics. ,vol. 7, pp. 745- 758 ,(2006) , 10.1038/NRG1904
D. PAETKAU, W. CALVERT, I. STIRLING, C. STROBECK, Microsatellite analysis of population structure in Canadian polar bears Molecular Ecology. ,vol. 4, pp. 347- 354 ,(1995) , 10.1111/J.1365-294X.1995.TB00227.X
Gilles Guillot, Arnaud Estoup, Frédéric Mortier, Jean François Cosson, A spatial statistical model for landscape genetics Genetics. ,vol. 170, pp. 1261- 1280 ,(2005) , 10.1534/GENETICS.104.033803