FDserver: A web service for protein folding research
作者： Bin-Guang Ma , Ling-Ling Chen , Hong-Yu Zhang
关键词:
摘要: *Summary:* To facilitate the study of protein folding, we have developed a web service for folding rate and type prediction as well calculation variety topological parameters structure, which is freely available to community.*Availability:* http://sdbi.sdut.edu.cn/FDserver
nature.com
sci-hub.se 参考文章(10)
Dmitry N. Ivankov, Alexei V. Finkelstein, Prediction of protein folding rates from the amino acid sequence-predicted secondary structure. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 101, pp. 8942- 8944 ,(2004) , 10.1073/PNAS.0402659101
Bin-Guang Ma, Jian-Xiu Guo, Hong-Yu Zhang, Direct correlation between proteins' folding rates and their amino acid compositions: an ab initio folding rate prediction. Proteins. ,vol. 65, pp. 362- 372 ,(2006) , 10.1002/PROT.21140
Alan R. Fersht, Valerie Daggett, Protein folding and unfolding at atomic resolution. Cell. ,vol. 108, pp. 573- 582 ,(2002) , 10.1016/S0092-8674(02)00620-7
Hongyi Zhou, Yaoqi Zhou, Folding Rate Prediction Using Total Contact Distance Biophysical Journal. ,vol. 82, pp. 458- 463 ,(2002) , 10.1016/S0006-3495(02)75410-6
Sophie E. Jackson, How do small single-domain proteins fold? Folding and Design. ,vol. 3, ,(1998) , 10.1016/S1359-0278(98)00033-9
M. M. Gromiha, A. M. Thangakani, S. Selvaraj, FOLD-RATE: prediction of protein folding rates from amino acid sequence. Nucleic Acids Research. ,vol. 34, pp. 70- 74 ,(2006) , 10.1093/NAR/GKL043
Bin-Guang Ma, Ling-Ling Chen, Hong-Yu Zhang, What Determines Protein Folding Type? An Investigation of Intrinsic Structural Properties and its Implications for Understanding Folding Mechanisms Journal of Molecular Biology. ,vol. 370, pp. 439- 448 ,(2007) , 10.1016/J.JMB.2007.04.051
K. F. Fulton, PFD: a database for the investigation of protein folding kinetics and stability Nucleic Acids Research. ,vol. 33, pp. D279- D283 ,(2004) , 10.1093/NAR/GKI016
E. Capriotti, R. Casadio, K-Fold: a tool for the prediction of the protein folding kinetic order and rate Bioinformatics. ,vol. 23, pp. 385- 386 ,(2007) , 10.1093/BIOINFORMATICS/BTL610
Karen L. Maxwell, David Wildes, Arash Zarrine-Afsar, Miguel A. De Los Rios, Andrew G. Brown, Claire T. Friel, Linda Hedberg, Jia-Cherng Horng, Diane Bona, Erik J. Miller, Alexis Vallée-Bélisle, Ewan R.G. Main, Francesco Bemporad, Linlin Qiu, Kaare Teilum, Ngoc-Diep Vu, Aled M. Edwards, Ingo Ruczinski, Flemming M. Poulsen, Birthe B. Kragelund, Stephen W. Michnick, Fabrizio Chiti, Yawen Bai, Stephen J. Hagen, Luis Serrano, Mikael Oliveberg, Daniel P. Raleigh, Pernilla Wittung-Stafshede, Sheena E. Radford, Sophie E. Jackson, Tobin R. Sosnick, Susan Marqusee, Alan R. Davidson, Kevin W. Plaxco, Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins. Protein Science. ,vol. 14, pp. 602- 616 ,(2005) , 10.1110/PS.041205405