Facilitating model reconstruction for single-particle scattering using small-angle X-ray scattering methods.

作者: Shufen Ma , Haiguang Liu

DOI: 10.1107/S1600576716004337

关键词:

摘要: X-ray free-electron lasers generate intense femtosecond pulses, so that high-resolution structure determination becomes feasible from noncrystalline samples, such as single particles or molecules. At the moment, orientation of sample cannot be precisely controlled, and consequently unknown needs to recovered using computational algorithms. This delays model reconstruction until all scattering patterns have been re-oriented, which often entails a long elapse time completion experiment. The multiple can summed form virtual powder diffraction pattern, low-resolution region, corresponding small-angle (SAXS) regime, analysed existing SAXS methods. work presents pipeline converts single-particle data sets into data, real-time is achieved retrieval approach implemented in software package SASTBX [Liu, Hexemer & Zwart (2012). J. Appl. Cryst. 45, 587–593]. To illustrate applications, two case studies are presented with real experimental collected at Linac Coherent Light Source.

参考文章(34)
Richard Neutze, Remco Wouts, David van der Spoel, Edgar Weckert, Janos Hajdu, Potential for biomolecular imaging with femtosecond X-ray pulses Nature. ,vol. 406, pp. 752- 757 ,(2000) , 10.1038/35021099
Filipe R N C Maia, The Coherent X-ray Imaging Data Bank Nature Methods. ,vol. 9, pp. 854- 855 ,(2012) , 10.1038/NMETH.2110
D. K. Saldin, H. C. Poon, M. J. Bogan, S. Marchesini, D. A. Shapiro, R. A. Kirian, U. Weierstall, J. C. H. Spence, New light on disordered ensembles: ab initio structure determination of one particle from scattering fluctuations of many copies. Physical Review Letters. ,vol. 106, pp. 115501- ,(2011) , 10.1103/PHYSREVLETT.106.115501
P. Emma, R. Akre, J. Arthur, R. Bionta, C. Bostedt, J. Bozek, A. Brachmann, P. Bucksbaum, R. Coffee, F.-J. Decker, Y. Ding, D. Dowell, S. Edstrom, A. Fisher, J. Frisch, S. Gilevich, J. Hastings, G. Hays, Ph. Hering, Z. Huang, R. Iverson, H. Loos, M. Messerschmidt, A. Miahnahri, S. Moeller, H.-D. Nuhn, G. Pile, D. Ratner, J. Rzepiela, D. Schultz, T. Smith, P. Stefan, H. Tompkins, J. Turner, J. Welch, W. White, J. Wu, G. Yocky, J. Galayda, First lasing and operation of an ångstrom-wavelength free-electron laser Nature Photonics. ,vol. 4, pp. 641- 647 ,(2010) , 10.1038/NPHOTON.2010.176
Ne-Te Duane Loh, Veit Elser, Reconstruction algorithm for single-particle diffraction imaging experiments. Physical Review E. ,vol. 80, pp. 026705- ,(2009) , 10.1103/PHYSREVE.80.026705
Dmitri I. Svergun, Maxim V. Petoukhov, Michel H.J. Koch, Determination of Domain Structure of Proteins from X-Ray Solution Scattering Biophysical Journal. ,vol. 80, pp. 2946- 2953 ,(2001) , 10.1016/S0006-3495(01)76260-1
D. Starodub, A. Aquila, S. Bajt, M. Barthelmess, A. Barty, C. Bostedt, J.D. Bozek, N. Coppola, R.B. Doak, S.W. Epp, B. Erk, L. Foucar, L. Gumprecht, C.Y. Hampton, A. Hartmann, R. Hartmann, P. Holl, S. Kassemeyer, N. Kimmel, H. Laksmono, M. Liang, N.D. Loh, L. Lomb, A.V. Martin, K. Nass, C. Reich, D. Rolles, B. Rudek, A. Rudenko, J. Schulz, R.L. Shoeman, R.G. Sierra, H. Soltau, J. Steinbrener, F. Stellato, S. Stern, G. Weidenspointner, M. Frank, J. Ullrich, L. Strüder, I. Schlichting, H.N. Chapman, J.C.H. Spence, M.J. Bogan, Single-particle structure determination by correlations of snapshot X-ray diffraction patterns. Nature Communications. ,vol. 3, pp. 1276- 1276 ,(2012) , 10.1038/NCOMMS2288
N. Nishimura, K. Hitomi, A. S. Arvai, R. P. Rambo, C. Hitomi, S. R. Cutler, J. I. Schroeder, E. D. Getzoff, Structural mechanism of abscisic acid binding and signaling by dimeric PYR1. Science. ,vol. 326, pp. 1373- 1379 ,(2009) , 10.1126/SCIENCE.1181829