Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.

作者: D. G. Gibson , G. A. Benders , C. Andrews-Pfannkoch , E. A. Denisova , H. Baden-Tillson

DOI: 10.1126/SCIENCE.1151721

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摘要: We have synthesized a 582,970 bp Mycoplasma genitalium genome. This synthetic genome, named M. JCVI-1.0, contains all the genes of wild-type G37 except MG408, which was disrupted by an antibiotic marker to block pathogenicity and allow for selection. To identify genome as synthetic, we inserted “watermarks” at intergenic sites known tolerate transposon insertions. Overlapping “cassettes” 5 7 kb, assembled from chemically oligonucleotides, were joined in vitro recombination produce intermediate assemblies approximately 24 72 kb (“1/8 genome”), 144 (“1/4 cloned bacterial artificial chromosomes (BACs) Escherichia coli. Most these clones sequenced, four 1/4 genomes with correct sequence identified. The complete transformationassociated (TAR) cloning yeast Saccharomyces cerevisiae, then isolated sequenced. A clone methods described here will be generally useful constructing large DNA molecules pieces also combinations natural segments. is bacterium smallest any independently replicating cell that has been grown pure

参考文章(30)
M. Itaya, K. Tsuge, M. Koizumi, K. Fujita, Combining two genomes in one cell: stable cloning of the Synechocystis PCC6803 genome in the Bacillus subtilis 168 genome. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 102, pp. 15971- 15976 ,(2005) , 10.1073/PNAS.0503868102
Tom Knight, Idempotent Vector Design for Standard Assembly of Biobricks MIT Artificial Intelligence Laboratory; MIT Synthetic Biology Working Group. ,(2003) , 10.21236/ADA457791
Robert A. Holt, Rene Warren, Stephane Flibotte, Perseus I. Missirlis, Duane E. Smailus, Rebuilding microbial genomes BioEssays. ,vol. 29, pp. 580- 590 ,(2007) , 10.1002/BIES.20585
S. D. Colman, P.-C. Hu, W. Litaker, K. F. Bott, A physical map of the Mycoplasma genitalium genome. Molecular Microbiology. ,vol. 4, pp. 683- 687 ,(1990) , 10.1111/J.1365-2958.1990.TB00638.X
C. Lartigue, J. I. Glass, N. Alperovich, R. Pieper, P. P. Parmar, C. A. Hutchison, H. O. Smith, J. C. Venter, Genome Transplantation in Bacteria: Changing One Species to Another Science. ,vol. 317, pp. 632- 638 ,(2007) , 10.1126/SCIENCE.1144622
V. Larionov, N. Kouprina, J. Graves, M. A. Resnick, Highly selective isolation of human DNAs from rodent–human hybrid cells as circular yeast artificial chromosomes by transformation-associated recombination cloning Proceedings of the National Academy of Sciences of the United States of America. ,vol. 93, pp. 13925- 13930 ,(1996) , 10.1073/PNAS.93.24.13925
Sun‐Hee Leem, Vladimir N Noskov, Jung‐Eun Park, Seung Il Kim, Vladimir Larionov, Natalay Kouprina, Optimum conditions for selective isolation of genes from complex genomes by transformation‐associated recombination cloning Nucleic Acids Research. ,vol. 31, ,(2003) , 10.1093/NAR/GNG029
VN Noskov, M Koriabine, G Solomon, M Randolph, JC Barrett, S-H Leem, L Stubbs, N Kouprina, V Larionov, Defining the minimal length of sequence homology required for selective gene isolation by TAR cloning Nucleic Acids Research. ,vol. 29, ,(2001) , 10.1093/NAR/29.6.E32