The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function.

Kiana Toufighi, Siobhan M. Brady, Ryan Austin, Eugene Ly, Nicholas J. Provart, The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses. Plant Journal. ,vol. 43, pp. 153- 163 ,(2005) , 10.1111/J.1365-313X.2005.02437.X

Yuanfang Guan, Chad L. Myers, Rong Lu, Ihor R. Lemischka, Carol J. Bult, Olga G. Troyanskaya, A genomewide functional network for the laboratory mouse. PLOS Computational Biology. ,vol. 4, ,(2008) , 10.1371/JOURNAL.PCBI.1000165

Andrew Chatr-Aryamontri, Arnaud Ceol, Luisa Montecchi Palazzi, Giuliano Nardelli, Maria Victoria Schneider, Luisa Castagnoli, Gianni Cesareni, MINT: the Molecular INTeraction database Nucleic Acids Research. ,vol. 35, pp. 572- 574 ,(2007) , 10.1093/NAR/GKL950

Clinton H Hansen, Robert G Endres, Ned S Wingreen, Chemotaxis in Escherichia coli: a molecular model for robust precise adaptation. PLOS Computational Biology. ,vol. 4, pp. 14- 27 ,(2005) , 10.1371/JOURNAL.PCBI.0040001

Huey‐Ling Kao, Kristin C. Gunsalus, Browsing multidimensional molecular networks with the generic network browser (N-Browse). Current protocols in human genetics. ,vol. 23, ,(2008) , 10.1002/0471250953.BI0911S23

Carl F. Schaefer, Kira Anthony, Shiva Krupa, Jeffrey Buchoff, Matthew Day, Timo Hannay, Kenneth H. Buetow, PID: the Pathway Interaction Database. Nucleic Acids Research. ,vol. 37, pp. 674- 679 ,(2009) , 10.1093/NAR/GKN653

Chad L Myers, Drew Robson, Adam Wible, Matthew A Hibbs, Camelia Chiriac, Chandra L Theesfeld, Kara Dolinski, Olga G Troyanskaya, Discovery of biological networks from diverse functional genomic data. Genome Biology. ,vol. 6, pp. 1- 16 ,(2005) , 10.1186/GB-2005-6-13-R114

L. J. Jensen, M. Kuhn, M. Stark, S. Chaffron, C. Creevey, J. Muller, T. Doerks, P. Julien, A. Roth, M. Simonovic, P. Bork, C. von Mering, STRING 8—a global view on proteins and their functional interactions in 630 organisms Nucleic Acids Research. ,vol. 37, pp. 412- 416 ,(2009) , 10.1093/NAR/GKN760

Sara Mostafavi, Quaid Morris, Fast integration of heterogeneous data sources for predicting gene function with limited annotation Bioinformatics. ,vol. 26, pp. 1759- 1765 ,(2010) , 10.1093/BIOINFORMATICS/BTQ262

TS Keshava Prasad, Renu Goel, Kumaran Kandasamy, Shivakumar Keerthikumar, Sameer Kumar, Suresh Mathivanan, Deepthi Telikicherla, Rajesh Raju, Beema Shafreen, Abhilash Venugopal, Lavanya Balakrishnan, Arivusudar Marimuthu, Sutopa Banerjee, Devi S Somanathan, Aimy Sebastian, Sandhya Rani, Somak Ray, CJ Harrys Kishore, Sashi Kanth, Mukhtar Ahmed, Manoj K Kashyap, Riaz Mohmood, YL Ramachandra, V Krishna, B Abdul Rahiman, Sujatha Mohan, Prathibha Ranganathan, Subhashri Ramabadran, Raghothama Chaerkady, Akhilesh Pandey, None, Human Protein Reference Database—2009 update Nucleic Acids Research. ,vol. 37, pp. 767- 772 ,(2009) , 10.1093/NAR/GKN892